Non-Coding RNA Search

SmaI-SSC11A03

Sequence:


               
               CATCACAGGCCTTGGACGGAGGCTGCCGAGCATTANTCCTGTGTCTTCGATCACATCGCA
GTGCCAGCCTCGCTCGTCCAGCCCGGNGTCTTACGCTGCTACTGTCCCGGNATGGGGACT
GGGAGCCGGAGGGGAGGGTCTAGCATGTGGCCCTTAGAACTTCCAGGAGGCACTGGGAAG
AAATGTGTCGGGCTGTTCCCGAAAGTACGAAGACTTCGTNCTGCGGGGCTTGAGCCCCAT
GGTCCCCCAGCAGGCAGCTAAGTCTGACCTCAGGTGTCAGAAGGTCTGGGTTCTGGTCTA
AGAAATCTGCTTCTTAGCTGACAGTNAGCTTAGATAAGGNTTTCTTNGGTNCTTGGCCTC
CTCGCCTGTAAAGTCAGGCATTTNACTCAAGGGGTCTCTCATGTCTTGTNTGGGCCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCACAGGCCTTGGACGGAGGCTGCCGAGCATTANTCCTGTGTCTTCGATCACATCGCA
GTGCCAGCCTCGCTCGTCCAGCCCGGNGTCTTACGCTGCTACTGTCCCGGNATGGGGACT
GGGAGCCGGAGGGGAGGGTCTAGCATGTGGCCCTTAGAACTTCCAGGAGGCACTGGGAAG
AAATGTGTCGGGCTGTTCCCGAAAGTACGAAGACTTCGTNCTGCGGGGCTTGAGCCCCAT
GGTCCCCCAGCAGGCAGCTAAGTCTGACCTCAGGTGTCAGAAGGTCTGGGTTCTGGTCTA
AGAAATCTGCTTCTTAGCTGACAGTNAGCTTAGATAAGGNTTTCTTNGGTNCTTGGCCTC
CTCGCCTGTAAAGTCAGGCATTTNACTCAAGGGGTCTCTCATGTCTTGTNTGGGCCCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               80-177, - strand, RNAz p=0.733046

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-177, - strand, RNAz p=0.733046

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-406, gnl|bosTau2|chr19 (14861156-14860725)
               

               
               1-406, gnl|canFam2|chr5 (34647132-34646798)
               

               
               1-406, gnl|dasNov1|scaffold_64254 (45888-45496)
               

               
               1-406, gnl|echTel1|scaffold_308456 (71457-71155)
               

               
               1-406, gnl|hg17|chr17 (4822101-4822478)
               

               
               1-406, gnl|Hg17|chr17 (4822632-4822204)
               

               
               1-406, gnl|loxAfr1|scaffold_49026 (10117-9753)
               

               
               1-406, gnl|mm7|chr11 (70760748-70761054)
               

               
               1-406, gnl|Mm7|chr11 (70761210-70760788)
               

               
               1-406, gnl|monDom2|scaffold_66 (3413545-3413164)
               

               
               1-406, gnl|oryCun1|scaffold_177492 (41323-40999)
               

               
               1-406, gnl|panTro1|chr19 (5150371-5150748)
               

               
               1-406, gnl|rheMac2|chr16 (4779956-4780334)
               

               
               1-406, gnl|rn3|chr10 (57572994-57573293)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-406, gnl|bosTau2|chr19 (14861156-14860725)
               

               
               1-406, gnl|canFam2|chr5 (34647132-34646798)
               

               
               1-406, gnl|dasNov1|scaffold_64254 (45888-45496)
               

               
               1-406, gnl|echTel1|scaffold_308456 (71457-71155)
               

               
               1-406, gnl|hg17|chr17 (4822101-4822478)
               

               
               1-406, gnl|Hg17|chr17 (4822632-4822204)
               

               
               1-406, gnl|loxAfr1|scaffold_49026 (10117-9753)
               

               
               1-406, gnl|mm7|chr11 (70760748-70761054)
               

               
               1-406, gnl|Mm7|chr11 (70761210-70760788)
               

               
               1-406, gnl|monDom2|scaffold_66 (3413545-3413164)
               

               
               1-406, gnl|oryCun1|scaffold_177492 (41323-40999)
               

               
               1-406, gnl|panTro1|chr19 (5150371-5150748)
               

               
               1-406, gnl|rheMac2|chr16 (4779956-4780334)
               

               
               1-406, gnl|rn3|chr10 (57572994-57573293)

	1-406, gnl\|bosTau2\|chr19 (14861156-14860725)
	1-406, gnl\|canFam2\|chr5 (34647132-34646798)
	1-406, gnl\|dasNov1\|scaffold_64254 (45888-45496)
	1-406, gnl\|echTel1\|scaffold_308456 (71457-71155)
	1-406, gnl\|hg17\|chr17 (4822101-4822478)
	1-406, gnl\|Hg17\|chr17 (4822632-4822204)
	1-406, gnl\|loxAfr1\|scaffold_49026 (10117-9753)
	1-406, gnl\|mm7\|chr11 (70760748-70761054)
	1-406, gnl\|Mm7\|chr11 (70761210-70760788)
	1-406, gnl\|monDom2\|scaffold_66 (3413545-3413164)
	1-406, gnl\|oryCun1\|scaffold_177492 (41323-40999)
	1-406, gnl\|panTro1\|chr19 (5150371-5150748)
	1-406, gnl\|rheMac2\|chr16 (4779956-4780334)
	1-406, gnl\|rn3\|chr10 (57572994-57573293)