Non-Coding RNA Search

SmaI-SSC18D03

Sequence:


               
               TGCCCATGCCGTACCCAGTGCCCCAGGGTCCTCAGTACTGTATACCACAGTACCGTCATA
GTGGCCCTCCTTATGTTGGGCCCCCACAACAGTATCCAGTTCAACCACCAGGGCCAGGTC
CTTTTTATCCTGGACCAGGGACCTGGAGACTTCCCCCAATGCTTATGGAACGCCTTTTTT
ACCCAAGTCAGCCCAGTGTATCAGTCAGCACCTATCATAGTGGCCTACGCAGCAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCCATGCCGTACCCAGTGCCCCAGGGTCCTCAGTACTGTATACCACAGTACCGTCATA
GTGGCCCTCCTTATGTTGGGCCCCCACAACAGTATCCAGTTCAACCACCAGGGCCAGGTC
CTTTTTATCCTGGACCAGGGACCTGGAGACTTCCCCCAATGCTTATGGAACGCCTTTTTT
ACCCAAGTCAGCCCAGTGTATCAGTCAGCACCTATCATAGTGGCCTACGCAGCAGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               49-168, - strand, RNAz p=0.979392

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               49-168, - strand, RNAz p=0.979392

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               49-168, BP266359 Sugano cDNA library, thyroid JTH Homo sapiens cDNA clone 
(dbj|BP266359.1|), blast E-value=4.00001e-41, identity=95% 
               

               
               49-168, BP312512 Sugano cDNA library, mammary gland OCUB-F Homo sapiens 
(dbj|BP312512.1|), blast E-value=4.00001e-41, identity=95% 
               

               
               49-168, DA688683 NT2NE2 Homo sapiens cDNA clone NT2NE2007568 5', mRNA 
(dbj|DA688683.1|), blast E-value=4.00001e-41, identity=95% 
               

               
               49-168, DA854994 PLACE7 Homo sapiens cDNA clone PLACE7005609 5', mRNA 
(dbj|DA854994.1|), blast E-value=4.00001e-41, identity=95% 
               

               
               49-163, naj47h10.x1 NCI_CGAP_HN12 Homo sapiens cDNA clone IMAGE 
(gb|BG223267.1|), blast E-value=7.00649e-43, identity=94.78% 
               

               
               49-168, AGENCOURT_16363279 NIH_MGC_221 Homo sapiens cDNA clone (gb|CK000963.1|), 
blast E-value=4.00001e-41, identity=95%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               49-168, BP266359 Sugano cDNA library, thyroid JTH Homo sapiens cDNA clone 
(dbj|BP266359.1|), blast E-value=4.00001e-41, identity=95% 
               

               
               49-168, BP312512 Sugano cDNA library, mammary gland OCUB-F Homo sapiens 
(dbj|BP312512.1|), blast E-value=4.00001e-41, identity=95% 
               

               
               49-168, DA688683 NT2NE2 Homo sapiens cDNA clone NT2NE2007568 5', mRNA 
(dbj|DA688683.1|), blast E-value=4.00001e-41, identity=95% 
               

               
               49-168, DA854994 PLACE7 Homo sapiens cDNA clone PLACE7005609 5', mRNA 
(dbj|DA854994.1|), blast E-value=4.00001e-41, identity=95% 
               

               
               49-163, naj47h10.x1 NCI_CGAP_HN12 Homo sapiens cDNA clone IMAGE 
(gb|BG223267.1|), blast E-value=7.00649e-43, identity=94.78% 
               

               
               49-168, AGENCOURT_16363279 NIH_MGC_221 Homo sapiens cDNA clone (gb|CK000963.1|), 
blast E-value=4.00001e-41, identity=95%

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               49-168, gnl|bosTau2|chr2 (85392377-85392494)
               

               
               49-168, gnl|canFam2|chr2 (80908579-80908439)
               

               
               49-168, gnl|danRer3|chr23 (30414377-30414246)
               

               
               49-168, gnl|echTel1|scaffold_276274 (14348-14488)
               

               
               49-168, gnl|galGal2|chrUn (86441030-86441166)
               

               
               49-168, gnl|hg17|chr1 (21052122-21052262)
               

               
               49-168, gnl|Hg17|chr1 (21052249-21052132)
               

               
               49-168, gnl|loxAfr1|scaffold_650 (76615-76475)
               

               
               49-168, gnl|mm7|chr4 (137475814-137475673)
               

               
               49-168, gnl|Mm7|chr4 (137475684-137475801)
               

               
               49-168, gnl|monDom2|scaffold_90 (2425264-2425403)
               

               
               49-168, gnl|panTro1|chr1 (21374462-21374602)
               

               
               49-168, gnl|rheMac2|chr1 (23642188-23642328)
               

               
               49-168, gnl|rn3|chr5 (156878316-156878175)
               

               
               49-168, gnl|tetNig1|chrUn_random (12280342-12280477)
               

               
               49-168, gnl|xenTro1|scaffold_1087 (42810-42673)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-168, gnl|bosTau2|chr2 (85392377-85392494)
               

               
               49-168, gnl|canFam2|chr2 (80908579-80908439)
               

               
               49-168, gnl|danRer3|chr23 (30414377-30414246)
               

               
               49-168, gnl|echTel1|scaffold_276274 (14348-14488)
               

               
               49-168, gnl|galGal2|chrUn (86441030-86441166)
               

               
               49-168, gnl|hg17|chr1 (21052122-21052262)
               

               
               49-168, gnl|Hg17|chr1 (21052249-21052132)
               

               
               49-168, gnl|loxAfr1|scaffold_650 (76615-76475)
               

               
               49-168, gnl|mm7|chr4 (137475814-137475673)
               

               
               49-168, gnl|Mm7|chr4 (137475684-137475801)
               

               
               49-168, gnl|monDom2|scaffold_90 (2425264-2425403)
               

               
               49-168, gnl|panTro1|chr1 (21374462-21374602)
               

               
               49-168, gnl|rheMac2|chr1 (23642188-23642328)
               

               
               49-168, gnl|rn3|chr5 (156878316-156878175)
               

               
               49-168, gnl|tetNig1|chrUn_random (12280342-12280477)
               

               
               49-168, gnl|xenTro1|scaffold_1087 (42810-42673)

	49-168, BP266359 Sugano cDNA library, thyroid JTH Homo sapiens cDNA clone (dbj\|BP266359.1\|), blast E-value=4.00001e-41, identity=95%
	49-168, BP312512 Sugano cDNA library, mammary gland OCUB-F Homo sapiens (dbj\|BP312512.1\|), blast E-value=4.00001e-41, identity=95%
	49-168, DA688683 NT2NE2 Homo sapiens cDNA clone NT2NE2007568 5', mRNA (dbj\|DA688683.1\|), blast E-value=4.00001e-41, identity=95%
	49-168, DA854994 PLACE7 Homo sapiens cDNA clone PLACE7005609 5', mRNA (dbj\|DA854994.1\|), blast E-value=4.00001e-41, identity=95%
	49-163, naj47h10.x1 NCI_CGAP_HN12 Homo sapiens cDNA clone IMAGE (gb\|BG223267.1\|), blast E-value=7.00649e-43, identity=94.78%
	49-168, AGENCOURT_16363279 NIH_MGC_221 Homo sapiens cDNA clone (gb\|CK000963.1\|), blast E-value=4.00001e-41, identity=95%

	49-168, gnl\|bosTau2\|chr2 (85392377-85392494)
	49-168, gnl\|canFam2\|chr2 (80908579-80908439)
	49-168, gnl\|danRer3\|chr23 (30414377-30414246)
	49-168, gnl\|echTel1\|scaffold_276274 (14348-14488)
	49-168, gnl\|galGal2\|chrUn (86441030-86441166)
	49-168, gnl\|hg17\|chr1 (21052122-21052262)
	49-168, gnl\|Hg17\|chr1 (21052249-21052132)
	49-168, gnl\|loxAfr1\|scaffold_650 (76615-76475)
	49-168, gnl\|mm7\|chr4 (137475814-137475673)
	49-168, gnl\|Mm7\|chr4 (137475684-137475801)
	49-168, gnl\|monDom2\|scaffold_90 (2425264-2425403)
	49-168, gnl\|panTro1\|chr1 (21374462-21374602)
	49-168, gnl\|rheMac2\|chr1 (23642188-23642328)
	49-168, gnl\|rn3\|chr5 (156878316-156878175)
	49-168, gnl\|tetNig1\|chrUn_random (12280342-12280477)
	49-168, gnl\|xenTro1\|scaffold_1087 (42810-42673)