Non-Coding RNA Search

SmaI-SSC19C05

Sequence:


               
               GCACAGGTGCCGGAATGAATCCGATAATCCTACAAGTGGCTTTTTAGGCTTGAAACATTT
CCTGCAGTGTTGGAGAGCCGGGTTTGGCTATACTCCCCTGGTGGCCTTTGGTAGGAAGTC
ACCGCATACCGGCCGGGAGGGATGGAGACACCCTCAGGAAACCGGTCACTTTTTCCTTTC
TTGGGCATTTTCCAAAATACTTTTACCGTCCNCTTCCCCCGCGGAGGACGAAGTGGTNAG
CTAAGTGCCTTGGTTATAGAAGAAAGGTCCCCTGTCACCAGCCCAGAATAAGCTTNATGC
CCGGCTGACTGTGCCGAGGAGATCCCTGGGGTCCAGCGACTGNC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACAGGTGCCGGAATGAATCCGATAATCCTACAAGTGGCTTTTTAGGCTTGAAACATTT
CCTGCAGTGTTGGAGAGCCGGGTTTGGCTATACTCCCCTGGTGGCCTTTGGTAGGAAGTC
ACCGCATACCGGCCGGGAGGGATGGAGACACCCTCAGGAAACCGGTCACTTTTTCCTTTC
TTGGGCATTTTCCAAAATACTTTTACCGTCCNCTTCCCCCGCGGAGGACGAAGTGGTNAG
CTAAGTGCCTTGGTTATAGAAGAAAGGTCCCCTGTCACCAGCCCAGAATAAGCTTNATGC
CCGGCTGACTGTGCCGAGGAGATCCCTGGGGTCCAGCGACTGNC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               115-261, - strand, RNAz p=0.982819
               

               
               119-228, - strand, RNAz p=0.724025

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-261, - strand, RNAz p=0.982819
               

               
               119-228, - strand, RNAz p=0.724025

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-342, gnl|bosTau2|chr19 (17102490-17102148)
               

               
               1-342, gnl|canFam2|chr9 (48951230-48951790)
               

               
               1-342, gnl|dasNov1|scaffold_7683 (71-618)
               

               
               1-342, gnl|hg17|chr17 (1304987-1305550)
               

               
               1-342, gnl|Hg17|chr17 (1305563-1305213)
               

               
               1-342, gnl|loxAfr1|scaffold_27981 (18123-18658)
               

               
               1-342, gnl|mm7|chr11 (75762164-75761578)
               

               
               1-342, gnl|Mm7|chr11 (75761563-75761912)
               

               
               1-342, gnl|oryCun1|scaffold_81179 (3682-3143)
               

               
               1-342, gnl|panTro1|chr19 (1440744-1441307)
               

               
               1-342, gnl|rheMac2|chr16 (1246546-1247094)
               

               
               1-342, gnl|rn3|chr10 (63032471-63031909)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-342, gnl|bosTau2|chr19 (17102490-17102148)
               

               
               1-342, gnl|canFam2|chr9 (48951230-48951790)
               

               
               1-342, gnl|dasNov1|scaffold_7683 (71-618)
               

               
               1-342, gnl|hg17|chr17 (1304987-1305550)
               

               
               1-342, gnl|Hg17|chr17 (1305563-1305213)
               

               
               1-342, gnl|loxAfr1|scaffold_27981 (18123-18658)
               

               
               1-342, gnl|mm7|chr11 (75762164-75761578)
               

               
               1-342, gnl|Mm7|chr11 (75761563-75761912)
               

               
               1-342, gnl|oryCun1|scaffold_81179 (3682-3143)
               

               
               1-342, gnl|panTro1|chr19 (1440744-1441307)
               

               
               1-342, gnl|rheMac2|chr16 (1246546-1247094)
               

               
               1-342, gnl|rn3|chr10 (63032471-63031909)

	115-261, - strand, RNAz p=0.982819
	119-228, - strand, RNAz p=0.724025

	1-342, gnl\|bosTau2\|chr19 (17102490-17102148)
	1-342, gnl\|canFam2\|chr9 (48951230-48951790)
	1-342, gnl\|dasNov1\|scaffold_7683 (71-618)
	1-342, gnl\|hg17\|chr17 (1304987-1305550)
	1-342, gnl\|Hg17\|chr17 (1305563-1305213)
	1-342, gnl\|loxAfr1\|scaffold_27981 (18123-18658)
	1-342, gnl\|mm7\|chr11 (75762164-75761578)
	1-342, gnl\|Mm7\|chr11 (75761563-75761912)
	1-342, gnl\|oryCun1\|scaffold_81179 (3682-3143)
	1-342, gnl\|panTro1\|chr19 (1440744-1441307)
	1-342, gnl\|rheMac2\|chr16 (1246546-1247094)
	1-342, gnl\|rn3\|chr10 (63032471-63031909)