Non-Coding RNA Search

SmaI-SSC19G03

Sequence:


               
               CTTGAGATGCCTTTCTTTCTTATTCTTCTCGTGTGGATGCCCAGAGTTACCATCCAGCTT
GAAGGGACCAAGAGGCTCCCTGGCCCATCATATCCTTGGCGCAGGTACAAGAATCGTCCT
GCTGACTGAGTTAGAATCTCCTGGTGAGAAGTGATTTGTTGTCCTGATTAGAATGTAAAC
ACTCGCTGGAGTTGAGTTTTGTCTCTCATGTGAGTTTTATTATAGCCTTCTGTGTTTATA
AACATGTCGCGAGCATGAGGGAGAAATGCGATAACCTTCCGAGCCCCCAGGAGAGTATCT
GTTTGTTTTCNCCATGGGCTAAAATTAAAGGTAAACTTCGAGGCCCTCTCTGAGAGACCC
GTATCCCTCTTGCTTTTGACCGGGTCGCCTGGGGATGGTGCCCAAGAATTTGCCAATTTC
CCAAATTGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGAGATGCCTTTCTTTCTTATTCTTCTCGTGTGGATGCCCAGAGTTACCATCCAGCTT
GAAGGGACCAAGAGGCTCCCTGGCCCATCATATCCTTGGCGCAGGTACAAGAATCGTCCT
GCTGACTGAGTTAGAATCTCCTGGTGAGAAGTGATTTGTTGTCCTGATTAGAATGTAAAC
ACTCGCTGGAGTTGAGTTTTGTCTCTCATGTGAGTTTTATTATAGCCTTCTGTGTTTATA
AACATGTCGCGAGCATGAGGGAGAAATGCGATAACCTTCCGAGCCCCCAGGAGAGTATCT
GTTTGTTTTCNCCATGGGCTAAAATTAAAGGTAAACTTCGAGGCCCTCTCTGAGAGACCC
GTATCCCTCTTGCTTTTGACCGGGTCGCCTGGGGATGGTGCCCAAGAATTTGCCAATTTC
CCAAATTGGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               314-431, + strand, RNAz p=0.985308

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               314-431, + strand, RNAz p=0.985308

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               5-431, gnl|bosTau2|chr18 (19876562-19876146)
               

               
               5-431, gnl|canFam2|chr2 (64760950-64760627)
               

               
               5-431, gnl|hg17|chr16 (52500051-52500378)
               

               
               5-431, gnl|Hg17|chr16 (52500106-52500524)
               

               
               5-431, gnl|loxAfr1|scaffold_961 (128874-128550)
               

               
               5-431, gnl|mm7|chr8 (90097586-90097899)
               

               
               5-431, gnl|Mm7|chr8 (90097638-90098024)
               

               
               5-431, gnl|monDom2|scaffold_35 (19681736-19682088)
               

               
               5-431, gnl|panTro1|chr18 (46535994-46536320)
               

               
               5-431, gnl|rheMac2|chr20 (52145256-52145583)
               

               
               5-431, gnl|rn3|chr19 (16682151-16681826)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-431, gnl|bosTau2|chr18 (19876562-19876146)
               

               
               5-431, gnl|canFam2|chr2 (64760950-64760627)
               

               
               5-431, gnl|hg17|chr16 (52500051-52500378)
               

               
               5-431, gnl|Hg17|chr16 (52500106-52500524)
               

               
               5-431, gnl|loxAfr1|scaffold_961 (128874-128550)
               

               
               5-431, gnl|mm7|chr8 (90097586-90097899)
               

               
               5-431, gnl|Mm7|chr8 (90097638-90098024)
               

               
               5-431, gnl|monDom2|scaffold_35 (19681736-19682088)
               

               
               5-431, gnl|panTro1|chr18 (46535994-46536320)
               

               
               5-431, gnl|rheMac2|chr20 (52145256-52145583)
               

               
               5-431, gnl|rn3|chr19 (16682151-16681826)

	5-431, gnl\|bosTau2\|chr18 (19876562-19876146)
	5-431, gnl\|canFam2\|chr2 (64760950-64760627)
	5-431, gnl\|hg17\|chr16 (52500051-52500378)
	5-431, gnl\|Hg17\|chr16 (52500106-52500524)
	5-431, gnl\|loxAfr1\|scaffold_961 (128874-128550)
	5-431, gnl\|mm7\|chr8 (90097586-90097899)
	5-431, gnl\|Mm7\|chr8 (90097638-90098024)
	5-431, gnl\|monDom2\|scaffold_35 (19681736-19682088)
	5-431, gnl\|panTro1\|chr18 (46535994-46536320)
	5-431, gnl\|rheMac2\|chr20 (52145256-52145583)
	5-431, gnl\|rn3\|chr19 (16682151-16681826)