Non-Coding RNA Search

SmaI-SSC21E10

Sequence:


               
               GGATACTAGTGAGGTTTGTTACCACTGAGCCACGACAGGAACCCTCTACTTGGTTTTCTT
ATTGGGTGCCACAGGCCTTCAGGACAGGGCGTGATTAAGGGTAACTATCTTCTGGAAAAA
GATCTAAAATTACACCAGCCGACTGTGTCAGAATCACTCATTAGCATTTCTCCCCCTTTT
TTTCTAGAGCTGGTGCTCAAGGTGAGGATTCAGAACCCATCTCTTCGAGAAAATGATTTC
ATTGAAATTGAACTGGACCGACAGGAGCTCACCTACCAGGAATTGCTCAGAGTGAGTTGC
TGTGAGCTGGGTGTTAATCCCGACCAAGTTGGAGAAGATCAGGGAGTTACCCAACACTCT
GGTAAAGAAAGGTAAGAAAAGTCTGTTAGGTGGNTGCTTTTTCCCATTTTGGGAAATNCC
CAGCTTCTTCCTTTGGGTNATGTGAAGCCACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATACTAGTGAGGTTTGTTACCACTGAGCCACGACAGGAACCCTCTACTTGGTTTTCTT
ATTGGGTGCCACAGGCCTTCAGGACAGGGCGTGATTAAGGGTAACTATCTTCTGGAAAAA
GATCTAAAATTACACCAGCCGACTGTGTCAGAATCACTCATTAGCATTTCTCCCCCTTTT
TTTCTAGAGCTGGTGCTCAAGGTGAGGATTCAGAACCCATCTCTTCGAGAAAATGATTTC
ATTGAAATTGAACTGGACCGACAGGAGCTCACCTACCAGGAATTGCTCAGAGTGAGTTGC
TGTGAGCTGGGTGTTAATCCCGACCAAGTTGGAGAAGATCAGGGAGTTACCCAACACTCT
GGTAAAGAAAGGTAAGAAAAGTCTGTTAGGTGGNTGCTTTTTCCCATTTTGGGAAATNCC
CAGCTTCTTCCTTTGGGTNATGTGAAGCCACCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61836307|ref|XP_607717.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61836307|ref|XP_607717.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               201-409, + strand, RNAz p=0.987828

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               201-409, + strand, RNAz p=0.987828

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               49-409, gnl|bosTau2|chr19 (27913304-27912949)
               

               
               49-409, gnl|Hg17|chr17 (46129625-46129260)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-409, gnl|bosTau2|chr19 (27913304-27912949)
               

               
               49-409, gnl|Hg17|chr17 (46129625-46129260)

	49-409, gnl\|bosTau2\|chr19 (27913304-27912949)
	49-409, gnl\|Hg17\|chr17 (46129625-46129260)