Non-Coding RNA Search

SmaI-SSC2B02

Sequence:


               
               GAGGAAGGTTTTCAAGTAAATTCACGGAAAACACATCCACTNGANTAGNACAACCTTANG
TCTTGTTTTACACTAAGACGACACAAAAGATGTTAAAGTTATCACCAAGCTGCCGGACAA
ATATATATTCCAACACCAAGGTGCAGACCAGCCTAGATCTGTGATTCAGAAATCAGGNTT
TGTCTTGGAAAGAGCTCAAAGGTTGAGAAGAACTCAAGAGCAAGTGAAGATAACTTTGGG
ANCTACAGTTTATCAGAAGNTCAACTTTTGCTCATTCAGTTACCAAAGGNCTGNTTATCA
TATATTCATATAGGANTGCCTTGGGTCATCTGATCAAATACTNTTTGGCCGTCTTNTGCT
ACATCCATGCAGCAAAAACTCTTNACAACNTGTGGNTAATTGGCAATCNTGAGTTTCCAG
CTTTCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAAGGTTTTCAAGTAAATTCACGGAAAACACATCCACTNGANTAGNACAACCTTANG
TCTTGTTTTACACTAAGACGACACAAAAGATGTTAAAGTTATCACCAAGCTGCCGGACAA
ATATATATTCCAACACCAAGGTGCAGACCAGCCTAGATCTGTGATTCAGAAATCAGGNTT
TGTCTTGGAAAGAGCTCAAAGGTTGAGAAGAACTCAAGAGCAAGTGAAGATAACTTTGGG
ANCTACAGTTTATCAGAAGNTCAACTTTTGCTCATTCAGTTACCAAAGGNCTGNTTATCA
TATATTCATATAGGANTGCCTTGGGTCATCTGATCAAATACTNTTTGGCCGTCTTNTGCT
ACATCCATGCAGCAAAAACTCTTNACAACNTGTGGNTAATTGGCAATCNTGAGTTTCCAG
CTTTCTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               41-240, + strand, RNAz p=0.92506

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-240, + strand, RNAz p=0.92506

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_021073, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_021073, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-427, gnl|bosTau2|chr23 (3765547-3765966)
               

               
               2-427, gnl|Hg17|chr6 (55848253-55847834)
               

               
               2-427, gnl|Mm7|chr9 (75812603-75813019)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-427, gnl|bosTau2|chr23 (3765547-3765966)
               

               
               2-427, gnl|Hg17|chr6 (55848253-55847834)
               

               
               2-427, gnl|Mm7|chr9 (75812603-75813019)

	2-427, gnl\|bosTau2\|chr23 (3765547-3765966)
	2-427, gnl\|Hg17\|chr6 (55848253-55847834)
	2-427, gnl\|Mm7\|chr9 (75812603-75813019)