SmaI-SSC5A03
|
GCTCATGATGGCAGTGTGTTCACATTCTGTCACATGAGAAATGGGATGTTATTAACTGGA
GGCGGGAAAGATAGAAAAATAATTCTATGGGATCATGATCTGAATCCTGAAAGAGAAATA
GAGGTTCCTGATCAGTATGGNACAATCAGAGCTGTAGCGGAAGGAAAAGCAGATCAATTC
TTAGTCGGCACATCACGAAACTTTATTTTACGGGGAACATTCANCGATGGCTTCCAAATA
GANGTACAGGGTCACACAGNTGNGCTTTNGGGTCTTGCCACACATCCCTTCAAAGATTTG
CTCTTGACT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCTCATGATGGCAGTGTGTTCACATTCTGTCACATGAGAAATGGGATGTTATTAACTGGA
GGCGGGAAAGATAGAAAAATAATTCTATGGGATCATGATCTGAATCCTGAAAGAGAAATA
GAGGTTCCTGATCAGTATGGNACAATCAGAGCTGTAGCGGAAGGAAAAGCAGATCAATTC
TTAGTCGGCACATCACGAAACTTTATTTTACGGGGAACATTCANCGATGGCTTCCAAATA
GANGTACAGGGTCACACAGNTGNGCTTTNGGGTCTTGCCACACATCCCTTCAAAGATTTG
CTCTTGACT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
1-125, gnl|bosTau2|chr11 (15359775-15359651) |
|
1-125, gnl|canFam2|chr17 (37007190-37007352) |
|
1-125, gnl|danRer3|chrNA (20175168-20175009) |
|
1-125, gnl|dasNov1|scaffold_156933 (211-357) |
|
1-125, gnl|echTel1|scaffold_311233 (58010-58172) |
|
1-125, gnl|fr1|chrUn (94702758-94702612) |
|
1-125, gnl|galGal2|chr3 (20058606-20058768) |
|
1-125, gnl|hg17|chr2 (42440029-42440191) |
|
1-125, gnl|Hg17|chr2 (42440061-42440185) |
|
1-125, gnl|loxAfr1|scaffold_19481 (3510-3345) |
|
1-125, gnl|mm7|chr17 (81748843-81749005) |
|
1-125, gnl|Mm7|chr17 (81748875-81748999) |
|
1-125, gnl|monDom2|scaffold_1 (350811-350973) |
|
1-125, gnl|oryCun1|scaffold_189422 (5695-5533) |
|
1-125, gnl|panTro1|chr12 (44033965-44034127) |
|
1-125, gnl|rheMac2|chr13 (42408896-42409058) |
|
1-125, gnl|rn3|chr6 (6787818-6787980) |
|
1-125, gnl|tetNig1|chr17 (7916359-7916505) |
|
1-125, gnl|xenTro1|scaffold_30 (858465-858627) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-125, gnl|bosTau2|chr11 (15359775-15359651) |
|
1-125, gnl|canFam2|chr17 (37007190-37007352) |
|
1-125, gnl|danRer3|chrNA (20175168-20175009) |
|
1-125, gnl|dasNov1|scaffold_156933 (211-357) |
|
1-125, gnl|echTel1|scaffold_311233 (58010-58172) |
|
1-125, gnl|fr1|chrUn (94702758-94702612) |
|
1-125, gnl|galGal2|chr3 (20058606-20058768) |
|
1-125, gnl|hg17|chr2 (42440029-42440191) |
|
1-125, gnl|Hg17|chr2 (42440061-42440185) |
|
1-125, gnl|loxAfr1|scaffold_19481 (3510-3345) |
|
1-125, gnl|mm7|chr17 (81748843-81749005) |
|
1-125, gnl|Mm7|chr17 (81748875-81748999) |
|
1-125, gnl|monDom2|scaffold_1 (350811-350973) |
|
1-125, gnl|oryCun1|scaffold_189422 (5695-5533) |
|
1-125, gnl|panTro1|chr12 (44033965-44034127) |
|
1-125, gnl|rheMac2|chr13 (42408896-42409058) |
|
1-125, gnl|rn3|chr6 (6787818-6787980) |
|
1-125, gnl|tetNig1|chr17 (7916359-7916505) |
|
1-125, gnl|xenTro1|scaffold_30 (858465-858627) |
