Non-Coding RNA Search

SmaI-SSC8A05

Sequence:


               
               ACGAGGNTGGCTTCCGCTGCCTGTGGGCCCTGCCTTCTTCCTACACCCGNTTCCTGGCCC
CCCAGCCCACCACGAGAAGCAGCACTGAGGGGGCCAAGAGACTCCCCAAGACTCTGTTTA
CATGCCCAGCCAGCCCTGCCCCTAGAAGGCTGTTTTGGGATTTTTAGAGGAGGAGGTGTA
TCTCTGGGTGACTTCAGTTCTGGNTATGGTGATTTCAGGCCAGTGGGTGGGATGGGGGTG
GAGGGGCCCAAGGGCGGTTGTTCGAGCAGAGAGGGCCACAGCCATACTCAGTATCACCTC
AACCAAANCACACATGGGACAACCTTCCAGAATTTCATCCCATTTGTTTTCCCCATGGAT
CCTTTTAGTAAAAGTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGAGGNTGGCTTCCGCTGCCTGTGGGCCCTGCCTTCTTCCTACACCCGNTTCCTGGCCC
CCCAGCCCACCACGAGAAGCAGCACTGAGGGGGCCAAGAGACTCCCCAAGACTCTGTTTA
CATGCCCAGCCAGCCCTGCCCCTAGAAGGCTGTTTTGGGATTTTTAGAGGAGGAGGTGTA
TCTCTGGGTGACTTCAGTTCTGGNTATGGTGATTTCAGGCCAGTGGGTGGGATGGGGGTG
GAGGGGCCCAAGGGCGGTTGTTCGAGCAGAGAGGGCCACAGCCATACTCAGTATCACCTC
AACCAAANCACACATGGGACAACCTTCCAGAATTTCATCCCATTTGTTTTCCCCATGGAT
CCTTTTAGTAAAAGTCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               267-375, - strand, RNAz p=0.71639

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               267-375, - strand, RNAz p=0.71639

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_001001524, -

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001001524, -

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               6-378, gnl|bosTau2|chr7 (2684441-2684078)
               

               
               6-378, gnl|canFam2|chr20 (46935301-46934974)
               

               
               6-378, gnl|echTel1|scaffold_300637 (35276-35589)
               

               
               6-378, gnl|hg17|chr19 (19236137-19236468)
               

               
               6-378, gnl|Hg17|chr19 (19236560-19236189)
               

               
               6-378, gnl|loxAfr1|scaffold_5159 (86589-86279)
               

               
               6-378, gnl|mm7|chr8 (68535196-68534935)
               

               
               6-378, gnl|oryCun1|scaffold_107575 (4186-4465)
               

               
               6-378, gnl|panTro1|chr20 (20312855-20313186)
               

               
               6-378, gnl|rheMac2|chr19 (18915835-18916165)
               

               
               6-378, gnl|rn3|chr16 (19827444-19827711)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-378, gnl|bosTau2|chr7 (2684441-2684078)
               

               
               6-378, gnl|canFam2|chr20 (46935301-46934974)
               

               
               6-378, gnl|echTel1|scaffold_300637 (35276-35589)
               

               
               6-378, gnl|hg17|chr19 (19236137-19236468)
               

               
               6-378, gnl|Hg17|chr19 (19236560-19236189)
               

               
               6-378, gnl|loxAfr1|scaffold_5159 (86589-86279)
               

               
               6-378, gnl|mm7|chr8 (68535196-68534935)
               

               
               6-378, gnl|oryCun1|scaffold_107575 (4186-4465)
               

               
               6-378, gnl|panTro1|chr20 (20312855-20313186)
               

               
               6-378, gnl|rheMac2|chr19 (18915835-18916165)
               

               
               6-378, gnl|rn3|chr16 (19827444-19827711)

	6-378, gnl\|bosTau2\|chr7 (2684441-2684078)
	6-378, gnl\|canFam2\|chr20 (46935301-46934974)
	6-378, gnl\|echTel1\|scaffold_300637 (35276-35589)
	6-378, gnl\|hg17\|chr19 (19236137-19236468)
	6-378, gnl\|Hg17\|chr19 (19236560-19236189)
	6-378, gnl\|loxAfr1\|scaffold_5159 (86589-86279)
	6-378, gnl\|mm7\|chr8 (68535196-68534935)
	6-378, gnl\|oryCun1\|scaffold_107575 (4186-4465)
	6-378, gnl\|panTro1\|chr20 (20312855-20313186)
	6-378, gnl\|rheMac2\|chr19 (18915835-18916165)
	6-378, gnl\|rn3\|chr16 (19827444-19827711)