Non-Coding RNA Search

SmaI-SSO4E04

Sequence:


               
               GCCGTCTACAGCACCAACAGCCCCGTGTGGGAGGAGGCCTTCCGGTTCTTNCTGCAAGAC
CCTCGAAGCCAGGTGCTCGATGTGCAGGTGAAGGATGATTCCAGGGCCCTNACTTTAGGG
GCACTGACCCTGCCTCTGGTCGCCTGCTGACTGCTCCTGAACTCACCCTGGACCAGTGGT
TCCAGCTCAGNAGCTCTGGTCCCAACTCCCGGGTCTACATGAAACTTGTGATGAGGCTCT
TGTACTTGGACTCTCAGAAGTGCGCTTCCCTGCTGGGCCTGATACTCTGAGGNTTGGNTC
TGGNCAACGAGTGNTCCAGACAGGAGCAGTGTGGATANCCCACTTGACCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGTCTACAGCACCAACAGCCCCGTGTGGGAGGAGGCCTTCCGGTTCTTNCTGCAAGAC
CCTCGAAGCCAGGTGCTCGATGTGCAGGTGAAGGATGATTCCAGGGCCCTNACTTTAGGG
GCACTGACCCTGCCTCTGGTCGCCTGCTGACTGCTCCTGAACTCACCCTGGACCAGTGGT
TCCAGCTCAGNAGCTCTGGTCCCAACTCCCGGGTCTACATGAAACTTGTGATGAGGCTCT
TGTACTTGGACTCTCAGAAGTGCGCTTCCCTGCTGGGCCTGATACTCTGAGGNTTGGNTC
TGGNCAACGAGTGNTCCAGACAGGAGCAGTGTGGATANCCCACTTGACCCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               85-202, + strand, RNAz p=0.736559

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               85-202, + strand, RNAz p=0.736559

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC004998, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC004998, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               85-236, gnl|bosTau2|chr5 (33482256-33482104)
               

               
               85-236, gnl|canFam2|chr10 (3438585-3438752)
               

               
               85-236, gnl|danRer3|chr23 (42034820-42034653)
               

               
               85-236, gnl|dasNov1|scaffold_51582 (4661-4822)
               

               
               85-236, gnl|echTel1|scaffold_307290 (3798-3644)
               

               
               85-236, gnl|fr1|chrUn (41051511-41051664)
               

               
               85-236, gnl|hg17|chr12 (54816794-54816961)
               

               
               85-236, gnl|Hg17|chr12 (54816792-54816944)
               

               
               85-236, gnl|loxAfr1|scaffold_13800 (45436-45603)
               

               
               85-236, gnl|mm7|chr10 (128019535-128019368)
               

               
               85-236, gnl|Mm7|chr10 (128019535-128019383)
               

               
               85-236, gnl|oryCun1|scaffold_213038 (52340-52173)
               

               
               85-236, gnl|panTro1|chr10 (56065196-56065363)
               

               
               85-236, gnl|rheMac2|chr11 (53194928-53195095)
               

               
               85-236, gnl|rn3|chr7 (1799389-1799222)
               

               
               85-236, gnl|tetNig1|chr9 (3977210-3977366)
               

               
               85-236, gnl|xenTro1|scaffold_85 (2174299-2174453)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-236, gnl|bosTau2|chr5 (33482256-33482104)
               

               
               85-236, gnl|canFam2|chr10 (3438585-3438752)
               

               
               85-236, gnl|danRer3|chr23 (42034820-42034653)
               

               
               85-236, gnl|dasNov1|scaffold_51582 (4661-4822)
               

               
               85-236, gnl|echTel1|scaffold_307290 (3798-3644)
               

               
               85-236, gnl|fr1|chrUn (41051511-41051664)
               

               
               85-236, gnl|hg17|chr12 (54816794-54816961)
               

               
               85-236, gnl|Hg17|chr12 (54816792-54816944)
               

               
               85-236, gnl|loxAfr1|scaffold_13800 (45436-45603)
               

               
               85-236, gnl|mm7|chr10 (128019535-128019368)
               

               
               85-236, gnl|Mm7|chr10 (128019535-128019383)
               

               
               85-236, gnl|oryCun1|scaffold_213038 (52340-52173)
               

               
               85-236, gnl|panTro1|chr10 (56065196-56065363)
               

               
               85-236, gnl|rheMac2|chr11 (53194928-53195095)
               

               
               85-236, gnl|rn3|chr7 (1799389-1799222)
               

               
               85-236, gnl|tetNig1|chr9 (3977210-3977366)
               

               
               85-236, gnl|xenTro1|scaffold_85 (2174299-2174453)

	85-236, gnl\|bosTau2\|chr5 (33482256-33482104)
	85-236, gnl\|canFam2\|chr10 (3438585-3438752)
	85-236, gnl\|danRer3\|chr23 (42034820-42034653)
	85-236, gnl\|dasNov1\|scaffold_51582 (4661-4822)
	85-236, gnl\|echTel1\|scaffold_307290 (3798-3644)
	85-236, gnl\|fr1\|chrUn (41051511-41051664)
	85-236, gnl\|hg17\|chr12 (54816794-54816961)
	85-236, gnl\|Hg17\|chr12 (54816792-54816944)
	85-236, gnl\|loxAfr1\|scaffold_13800 (45436-45603)
	85-236, gnl\|mm7\|chr10 (128019535-128019368)
	85-236, gnl\|Mm7\|chr10 (128019535-128019383)
	85-236, gnl\|oryCun1\|scaffold_213038 (52340-52173)
	85-236, gnl\|panTro1\|chr10 (56065196-56065363)
	85-236, gnl\|rheMac2\|chr11 (53194928-53195095)
	85-236, gnl\|rn3\|chr7 (1799389-1799222)
	85-236, gnl\|tetNig1\|chr9 (3977210-3977366)
	85-236, gnl\|xenTro1\|scaffold_85 (2174299-2174453)