SmaI-SSO5H04
|
GAGGAAAAGGTGATCACTGCACTGAATGTCACCCAGGTCCAGTATGCTCGGGNTGCTCTG
GCTAAGAACATCTACAGCCGCCTCTTCAACTGGATAGTGAATCGAATCAATGAGAGTATC
AAGGTGGACACTGGGGAGAAGAAGAAGGTCATGGGGGTCCTGGACATCTACGGCTTTGAA
ATATTAGAGGATAATAGCTTCGAGCAATTTGTGATCAACTACTGCAATGAGAAGCTACAG
CAGGTGTTCATAGAGATGACGCTGAAAGAGGAGCAAGAGGAGTATAAGCGAGAGGGCATA
CCGTGGACGAAGGTGGACTACTTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAGGAAAAGGTGATCACTGCACTGAATGTCACCCAGGTCCAGTATGCTCGGGNTGCTCTG
GCTAAGAACATCTACAGCCGCCTCTTCAACTGGATAGTGAATCGAATCAATGAGAGTATC
AAGGTGGACACTGGGGAGAAGAAGAAGGTCATGGGGGTCCTGGACATCTACGGCTTTGAA
ATATTAGAGGATAATAGCTTCGAGCAATTTGTGATCAACTACTGCAATGAGAAGCTACAG
CAGGTGTTCATAGAGATGACGCTGAAAGAGGAGCAAGAGGAGTATAAGCGAGAGGGCATA
CCGTGGACGAAGGTGGACTACTTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
188-295, gnl|bosTau2|chr5 (32644694-32644801) |
|
188-295, gnl|canFam2|chr10 (4167055-4167225) |
|
188-295, gnl|danRer3|chr14 (39204385-39204519) |
|
188-295, gnl|dasNov1|scaffold_8810 (52338-52168) |
|
188-295, gnl|echTel1|scaffold_295605 (3914-3744) |
|
188-295, gnl|fr1|chrUn (161923592-161923732) |
|
188-295, gnl|galGal2|chr7 (8925560-8925409) |
|
188-295, gnl|hg17|chr12 (55721214-55721376) |
|
188-295, gnl|Hg17|chr12 (55721341-55721234) |
|
188-295, gnl|loxAfr1|scaffold_51757 (20153-20324) |
|
188-295, gnl|mm7|chr10 (127214280-127214123) |
|
188-295, gnl|Mm7|chr10 (127214149-127214256) |
|
188-295, gnl|monDom2|scaffold_2 (97379410-97379275) |
|
188-295, gnl|oryCun1|scaffold_193349 (8220-8047) |
|
188-295, gnl|panTro1|chr10 (56963131-56963293) |
|
188-295, gnl|rheMac2|chr11 (54105429-54105591) |
|
188-295, gnl|rn3|chr7 (67725358-67725202) |
|
188-295, gnl|tetNig1|chr2 (15232222-15232112) |
|
188-295, gnl|xenTro1|scaffold_887 (357052-357215) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
188-295, gnl|bosTau2|chr5 (32644694-32644801) |
|
188-295, gnl|canFam2|chr10 (4167055-4167225) |
|
188-295, gnl|danRer3|chr14 (39204385-39204519) |
|
188-295, gnl|dasNov1|scaffold_8810 (52338-52168) |
|
188-295, gnl|echTel1|scaffold_295605 (3914-3744) |
|
188-295, gnl|fr1|chrUn (161923592-161923732) |
|
188-295, gnl|galGal2|chr7 (8925560-8925409) |
|
188-295, gnl|hg17|chr12 (55721214-55721376) |
|
188-295, gnl|Hg17|chr12 (55721341-55721234) |
|
188-295, gnl|loxAfr1|scaffold_51757 (20153-20324) |
|
188-295, gnl|mm7|chr10 (127214280-127214123) |
|
188-295, gnl|Mm7|chr10 (127214149-127214256) |
|
188-295, gnl|monDom2|scaffold_2 (97379410-97379275) |
|
188-295, gnl|oryCun1|scaffold_193349 (8220-8047) |
|
188-295, gnl|panTro1|chr10 (56963131-56963293) |
|
188-295, gnl|rheMac2|chr11 (54105429-54105591) |
|
188-295, gnl|rn3|chr7 (67725358-67725202) |
|
188-295, gnl|tetNig1|chr2 (15232222-15232112) |
|
188-295, gnl|xenTro1|scaffold_887 (357052-357215) |
