Non-Coding RNA Search

SmaI-SSZ84031

Sequence:


               
               GGCAAAGACCTCTGCCGTCGTCTCGTTCATGTCAAGCTCGCCGCTCCGNAGAACGCCCTG
TCCGATATATCGGACATGCTGAAGAACTTGACCGAGAGCCACGCGTCCAAGTCCTCCACC
CCTTCCAGCATCTCCGAGAAGTCGGACATGGATGGCGCCACCCTGGAGGAGGCCGAGGAG
GCGACGCCTGCGCAGAAGAGGAAGGGCCGCCAGTCTAACTGGAACCCCCAGCACCTGCTG
ATCCTCCAGGCCCAGTTCGCCGCCAGCCTCCGGCAGACCTCGGAGGGCAAGTACGTCATG
TCGGACCTGAGCCCCCAGGAGCGCATGCACATCTCCCGGTTTCACCGGGCTTCTTCCATG
ACCACCATTCAGCCACTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAAAGACCTCTGCCGTCGTCTCGTTCATGTCAAGCTCGCCGCTCCGNAGAACGCCCTG
TCCGATATATCGGACATGCTGAAGAACTTGACCGAGAGCCACGCGTCCAAGTCCTCCACC
CCTTCCAGCATCTCCGAGAAGTCGGACATGGATGGCGCCACCCTGGAGGAGGCCGAGGAG
GCGACGCCTGCGCAGAAGAGGAAGGGCCGCCAGTCTAACTGGAACCCCCAGCACCTGCTG
ATCCTCCAGGCCCAGTTCGCCGCCAGCCTCCGGCAGACCTCGGAGGGCAAGTACGTCATG
TCGGACCTGAGCCCCCAGGAGCGCATGCACATCTCCCGGTTTCACCGGGCTTCTTCCATG
ACCACCATTCAGCCACTGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               159-278, - strand, RNAz p=0.70323

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-278, - strand, RNAz p=0.70323

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-379, gnl|bosTau2|chr18 (34910844-34911219)
               

               
               1-379, gnl|canFam2|chr1 (123369744-123368531)
               

               
               1-379, gnl|danRer3|chr7 (37564121-37565418)
               

               
               1-379, gnl|dasNov1|scaffold_3665 (58329-59543)
               

               
               1-379, gnl|echTel1|scaffold_305443 (6388-5187)
               

               
               1-379, gnl|fr1|chrUn (172574184-172575553)
               

               
               1-379, gnl|galGal2|chr11 (9425062-9426272)
               

               
               1-379, gnl|hg17|chr19 (36459273-36460486)
               

               
               1-379, gnl|Hg17|chr19 (36460067-36459692)
               

               
               1-379, gnl|loxAfr1|scaffold_49711 (7781-6569)
               

               
               1-379, gnl|mm7|chr7 (33663011-33661797)
               

               
               1-379, gnl|Mm7|chr7 (33662214-33662589)
               

               
               1-379, gnl|monDom2|scaffold_35 (5928779-5927569)
               

               
               1-379, gnl|oryCun1|scaffold_198133 (7527-8741)
               

               
               1-379, gnl|panTro1|chr20 (32949379-32950592)
               

               
               1-379, gnl|rheMac2|chr19 (37783295-37784508)
               

               
               1-379, gnl|rn3|chr1 (89312798-89311581)
               

               
               1-379, gnl|tetNig1|chrUn_random (54360149-54358868)
               

               
               1-379, gnl|xenTro1|scaffold_83 (1501341-1500117)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-379, gnl|bosTau2|chr18 (34910844-34911219)
               

               
               1-379, gnl|canFam2|chr1 (123369744-123368531)
               

               
               1-379, gnl|danRer3|chr7 (37564121-37565418)
               

               
               1-379, gnl|dasNov1|scaffold_3665 (58329-59543)
               

               
               1-379, gnl|echTel1|scaffold_305443 (6388-5187)
               

               
               1-379, gnl|fr1|chrUn (172574184-172575553)
               

               
               1-379, gnl|galGal2|chr11 (9425062-9426272)
               

               
               1-379, gnl|hg17|chr19 (36459273-36460486)
               

               
               1-379, gnl|Hg17|chr19 (36460067-36459692)
               

               
               1-379, gnl|loxAfr1|scaffold_49711 (7781-6569)
               

               
               1-379, gnl|mm7|chr7 (33663011-33661797)
               

               
               1-379, gnl|Mm7|chr7 (33662214-33662589)
               

               
               1-379, gnl|monDom2|scaffold_35 (5928779-5927569)
               

               
               1-379, gnl|oryCun1|scaffold_198133 (7527-8741)
               

               
               1-379, gnl|panTro1|chr20 (32949379-32950592)
               

               
               1-379, gnl|rheMac2|chr19 (37783295-37784508)
               

               
               1-379, gnl|rn3|chr1 (89312798-89311581)
               

               
               1-379, gnl|tetNig1|chrUn_random (54360149-54358868)
               

               
               1-379, gnl|xenTro1|scaffold_83 (1501341-1500117)

	1-379, gnl\|bosTau2\|chr18 (34910844-34911219)
	1-379, gnl\|canFam2\|chr1 (123369744-123368531)
	1-379, gnl\|danRer3\|chr7 (37564121-37565418)
	1-379, gnl\|dasNov1\|scaffold_3665 (58329-59543)
	1-379, gnl\|echTel1\|scaffold_305443 (6388-5187)
	1-379, gnl\|fr1\|chrUn (172574184-172575553)
	1-379, gnl\|galGal2\|chr11 (9425062-9426272)
	1-379, gnl\|hg17\|chr19 (36459273-36460486)
	1-379, gnl\|Hg17\|chr19 (36460067-36459692)
	1-379, gnl\|loxAfr1\|scaffold_49711 (7781-6569)
	1-379, gnl\|mm7\|chr7 (33663011-33661797)
	1-379, gnl\|Mm7\|chr7 (33662214-33662589)
	1-379, gnl\|monDom2\|scaffold_35 (5928779-5927569)
	1-379, gnl\|oryCun1\|scaffold_198133 (7527-8741)
	1-379, gnl\|panTro1\|chr20 (32949379-32950592)
	1-379, gnl\|rheMac2\|chr19 (37783295-37784508)
	1-379, gnl\|rn3\|chr1 (89312798-89311581)
	1-379, gnl\|tetNig1\|chrUn_random (54360149-54358868)
	1-379, gnl\|xenTro1\|scaffold_83 (1501341-1500117)