SmaI-SSZ84108
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGCCTTCGCTGGGCAAACGTCACCCTCCCTTCCGGCTGCCGCAGGAACACTGCTTGTT TGAGCGACTGCGGGAGATGGTCACAAAGGGTATTGTCCACCCGGACCCACTCTGGATCCC ATTCAAAGAGGCAGCAGTGACCCTCATTTACCAGCTGGCAGAGGGCCCTGAGGCAATCTG TGCCCAGATGTTGCAGGGCTGTGCGAANAGGGCCCTGGAGAAGCTGGAGGAGAAGAACCC TCCCCAGGANGCCCCGAAGGACACCCCCATGCTCCCCATTTCCTGTTGATNAACCTGCTG TCCCTGGCTGGGGATGTGGGCTCTGCAGCAGCTGGTGCACTGGAGCAGGCAGTGAAGTGG NGAACTCTGTCGGCGCCGAGTTCTTCAAGGAAGAGCAGGAGCATAAGGGAAAAGATTCCA A |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGCCTTCGCTGGGCAAACGTCACCCTCCCTTCCGGCTGCCGCAGGAACACTGCTTGTT TGAGCGACTGCGGGAGATGGTCACAAAGGGTATTGTCCACCCGGACCCACTCTGGATCCC ATTCAAAGAGGCAGCAGTGACCCTCATTTACCAGCTGGCAGAGGGCCCTGAGGCAATCTG TGCCCAGATGTTGCAGGGCTGTGCGAANAGGGCCCTGGAGAAGCTGGAGGAGAAGAACCC TCCCCAGGANGCCCCGAAGGACACCCCCATGCTCCCCATTTCCTGTTGATNAACCTGCTG TCCCTGGCTGGGGATGTGGGCTCTGCAGCAGCTGGTGCACTGGAGCAGGCAGTGAAGTGG NGAACTCTGTCGGCGCCGAGTTCTTCAAGGAAGAGCAGGAGCATAAGGGAAAAGATTCCA A |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 130-255, - strand, RNAz p=0.742375 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 130-255, - strand, RNAz p=0.742375 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 96-255, gnl|bosTau2|chr5 (60644313-60644154) | |
| 96-255, gnl|canFam2|chr27 (41508567-41508415) | |
| 96-255, gnl|danRer3|chr2 (40305531-40305685) | |
| 96-255, gnl|dasNov1|scaffold_4087 (98033-98184) | |
| 96-255, gnl|echTel1|scaffold_45045 (6607-6455) | |
| 96-255, gnl|galGal2|chr1 (70999619-70999762) | |
| 96-255, gnl|hg17|chr12 (6505877-6506029) | |
| 96-255, gnl|Hg17|chr12 (6505881-6506040) | |
| 96-255, gnl|loxAfr1|scaffold_112921 (5037-4885) | |
| 96-255, gnl|mm7|chr6 (125199612-125199463) | |
| 96-255, gnl|Mm7|chr6 (125199606-125199450) | |
| 96-255, gnl|monDom2|scaffold_31 (14922880-14923033) | |
| 96-255, gnl|oryCun1|scaffold_199228 (68221-68373) | |
| 96-255, gnl|panTro1|chr10 (7040634-7040786) | |
| 96-255, gnl|rheMac2|chr11 (6677759-6677911) | |
| 96-255, gnl|rn3|chr4 (161539433-161539284) | |
| 96-255, gnl|xenTro1|scaffold_991 (76526-76393) | |
| 258-421, gnl|bosTau2|chr5 (60643556-60643394) | |
| 258-421, gnl|canFam2|chr27 (41507928-41508056) | |
| 258-421, gnl|dasNov1|scaffold_4087 (98706-98578) | |
| 258-421, gnl|echTel1|scaffold_45045 (5883-6011) | |
| 258-421, gnl|fr1|chrUn (74833691-74833573) | |
| 258-421, gnl|Hg17|chr12 (6506318-6506483) | |
| 258-421, gnl|hg17|chr7 (34564401-34564529) | |
| 258-421, gnl|loxAfr1|scaffold_112921 (4348-4476) | |
| 258-421, gnl|mm7|chr6 (125198908-125199036) | |
| 258-421, gnl|Mm7|chr6 (125199079-125198914) | |
| 258-421, gnl|monDom2|scaffold_31 (14923779-14923648) | |
| 258-421, gnl|oryCun1|scaffold_199228 (68796-68668) | |
| 258-421, gnl|panTro1|chr6 (35726133-35726261) | |
| 258-421, gnl|rheMac2|chr3 (91407068-91406939) | |
| 258-421, gnl|rn3|chr4 (161538911-161539039) | |
| 258-421, gnl|tetNig1|chr8 (8900644-8900544) | |
| 258-421, gnl|xenTro1|scaffold_991 (75266-75397) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 96-255, gnl|bosTau2|chr5 (60644313-60644154) | |
| 96-255, gnl|canFam2|chr27 (41508567-41508415) | |
| 96-255, gnl|danRer3|chr2 (40305531-40305685) | |
| 96-255, gnl|dasNov1|scaffold_4087 (98033-98184) | |
| 96-255, gnl|echTel1|scaffold_45045 (6607-6455) | |
| 96-255, gnl|galGal2|chr1 (70999619-70999762) | |
| 96-255, gnl|hg17|chr12 (6505877-6506029) | |
| 96-255, gnl|Hg17|chr12 (6505881-6506040) | |
| 96-255, gnl|loxAfr1|scaffold_112921 (5037-4885) | |
| 96-255, gnl|mm7|chr6 (125199612-125199463) | |
| 96-255, gnl|Mm7|chr6 (125199606-125199450) | |
| 96-255, gnl|monDom2|scaffold_31 (14922880-14923033) | |
| 96-255, gnl|oryCun1|scaffold_199228 (68221-68373) | |
| 96-255, gnl|panTro1|chr10 (7040634-7040786) | |
| 96-255, gnl|rheMac2|chr11 (6677759-6677911) | |
| 96-255, gnl|rn3|chr4 (161539433-161539284) | |
| 96-255, gnl|xenTro1|scaffold_991 (76526-76393) | |
| 258-421, gnl|bosTau2|chr5 (60643556-60643394) | |
| 258-421, gnl|canFam2|chr27 (41507928-41508056) | |
| 258-421, gnl|dasNov1|scaffold_4087 (98706-98578) | |
| 258-421, gnl|echTel1|scaffold_45045 (5883-6011) | |
| 258-421, gnl|fr1|chrUn (74833691-74833573) | |
| 258-421, gnl|Hg17|chr12 (6506318-6506483) | |
| 258-421, gnl|hg17|chr7 (34564401-34564529) | |
| 258-421, gnl|loxAfr1|scaffold_112921 (4348-4476) | |
| 258-421, gnl|mm7|chr6 (125198908-125199036) | |
| 258-421, gnl|Mm7|chr6 (125199079-125198914) | |
| 258-421, gnl|monDom2|scaffold_31 (14923779-14923648) | |
| 258-421, gnl|oryCun1|scaffold_199228 (68796-68668) | |
| 258-421, gnl|panTro1|chr6 (35726133-35726261) | |
| 258-421, gnl|rheMac2|chr3 (91407068-91406939) | |
| 258-421, gnl|rn3|chr4 (161538911-161539039) | |
| 258-421, gnl|tetNig1|chr8 (8900644-8900544) | |
| 258-421, gnl|xenTro1|scaffold_991 (75266-75397) |