Non-Coding RNA Search

Spl1-SPL010002E04

Sequence:


               
               CTCCCTCAGCCCCTGCATCCCTCGTTTCCCAGCTAGCAGGGCATCGCTCTCTGGCCAGCA
CCTCTTGAAATGCTCTCAGAAACCAGCCTGGTTTGTTTGGATGAACCGAGGAAGGGTTAG
GCCAGTGCAGTATTTATATGGGTGAAACTGAAACCTCAGATCCCAGCGTAGATTTTCAAG
CAGACAGACATTCCTCAAGTCAGCGAAGGAAAGTGCCGGCTCCCCAGGGTTACCCCGGGA
CAGCAGCCCGCACGTCAGCAGAGCATCACGTGGTGTTTACACTCGCAGAGCGGGACAGCC
GGCCGTCCTGTGAGCAGACTGCAGAACCCAGTGGCATCTGGTTTTTCCAGCCATGCGTGG
GGCACCAAACTTCCTGTCATGCCCCGCTCCCCCACCCCAGGTCCCTCTTCTTCATTGGCA
CTCAGTGGAAATGTTCACTGGAAACTCAACTTCCCATTTTTGGAGATGCTTCTAGAAACT
AGACCCCTTTCCAGCTTATAGTGAGGTGACCTTTTAGTTCAGCTTCAATCTTTTTTTCCT
TCCCTTAAAAGTAAATTAATGAGGAAGTGATACTGGTTCAGTATAAATCAGTGTTTTCTT
AACCTTGTTTTTTTTTTTTTTCTTTTTTTTGCGATCACTGCCCCCACCCCAGCCCAGCCT
TTTTTTGACTTTTTTTTTTTATCCTAATTGCACATCAAAAAGAATAATGCTGGCgttccc
atcgtggctcagcggaaacgaatctgactagtatccatgaggacgatccctggccttgct
caatgggttaaagatctggtgctgctatgagctgtggtgcaggt

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCTCAGCCCCTGCATCCCTCGTTTCCCAGCTAGCAGGGCATCGCTCTCTGGCCAGCA
CCTCTTGAAATGCTCTCAGAAACCAGCCTGGTTTGTTTGGATGAACCGAGGAAGGGTTAG
GCCAGTGCAGTATTTATATGGGTGAAACTGAAACCTCAGATCCCAGCGTAGATTTTCAAG
CAGACAGACATTCCTCAAGTCAGCGAAGGAAAGTGCCGGCTCCCCAGGGTTACCCCGGGA
CAGCAGCCCGCACGTCAGCAGAGCATCACGTGGTGTTTACACTCGCAGAGCGGGACAGCC
GGCCGTCCTGTGAGCAGACTGCAGAACCCAGTGGCATCTGGTTTTTCCAGCCATGCGTGG
GGCACCAAACTTCCTGTCATGCCCCGCTCCCCCACCCCAGGTCCCTCTTCTTCATTGGCA
CTCAGTGGAAATGTTCACTGGAAACTCAACTTCCCATTTTTGGAGATGCTTCTAGAAACT
AGACCCCTTTCCAGCTTATAGTGAGGTGACCTTTTAGTTCAGCTTCAATCTTTTTTTCCT
TCCCTTAAAAGTAAATTAATGAGGAAGTGATACTGGTTCAGTATAAATCAGTGTTTTCTT
AACCTTGTTTTTTTTTTTTTTCTTTTTTTTGCGATCACTGCCCCCACCCCAGCCCAGCCT
TTTTTTGACTTTTTTTTTTTATCCTAATTGCACATCAAAAAGAATAATGCTGGCgttccc
atcgtggctcagcggaaacgaatctgactagtatccatgaggacgatccctggccttgct
caatgggttaaagatctggtgctgctatgagctgtggtgcaggt

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               434-552, - strand, RNAz p=0.998873

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               434-552, - strand, RNAz p=0.998873

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               7-278, gnl|bosTau2|chr7 (17815127-17815391)
               

               
               7-278, gnl|canFam2|chr20 (59683475-59683025)
               

               
               7-278, gnl|hg17|chr19 (2550025-2550513)
               

               
               7-278, gnl|Hg17|chr19 (2550467-2550152)
               

               
               7-278, gnl|loxAfr1|scaffold_72754 (9487-8965)
               

               
               7-278, gnl|panTro1|chr20 (2672614-2673102)
               

               
               7-278, gnl|rheMac2|chr19 (2419970-2420461)
               


               
               390-710, gnl|bosTau2|chr7 (17815424-17815732)
               

               
               390-710, gnl|Hg17|chr19 (2550112-2549784)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-278, gnl|bosTau2|chr7 (17815127-17815391)
               

               
               7-278, gnl|canFam2|chr20 (59683475-59683025)
               

               
               7-278, gnl|hg17|chr19 (2550025-2550513)
               

               
               7-278, gnl|Hg17|chr19 (2550467-2550152)
               

               
               7-278, gnl|loxAfr1|scaffold_72754 (9487-8965)
               

               
               7-278, gnl|panTro1|chr20 (2672614-2673102)
               

               
               7-278, gnl|rheMac2|chr19 (2419970-2420461)
               


               
               390-710, gnl|bosTau2|chr7 (17815424-17815732)
               

               
               390-710, gnl|Hg17|chr19 (2550112-2549784)

	7-278, gnl\|bosTau2\|chr7 (17815127-17815391)
	7-278, gnl\|canFam2\|chr20 (59683475-59683025)
	7-278, gnl\|hg17\|chr19 (2550025-2550513)
	7-278, gnl\|Hg17\|chr19 (2550467-2550152)
	7-278, gnl\|loxAfr1\|scaffold_72754 (9487-8965)
	7-278, gnl\|panTro1\|chr20 (2672614-2673102)
	7-278, gnl\|rheMac2\|chr19 (2419970-2420461)

	390-710, gnl\|bosTau2\|chr7 (17815424-17815732)
	390-710, gnl\|Hg17\|chr19 (2550112-2549784)