Non-Coding RNA Search

Spl1-SPL010002G07

Sequence:


               
               CCCTGGCCATAAACCTACTGCTCTCCCTCCCATTCCTTCTACTCCAGCCAAGTTGGCCTT
CCCTGCTGATAAACACCATGCTGTTCTTGCCTCTGGGCCTTCACCTTTGCTGTTCCCTCT
GCCAGGGATACTGTTCCTTCAGATCTCTGCATGTGTCCTTACCATGCGTGTCCCAGCTCA
CACCTCAGCTTTCTGATAGGCTTTCCTTGTGATTTTAAAAgagttccctggtggctcagt
gggttaaggattctggattgccattgcggtggctcaggtcactgctgtgacacaggtttg
atccctggcccggaaacttccacatgctgtggatgtggccAAAATAAATAAATAAATAAA
ACAGCAACTCTTCTGTTTTATTCCCTTCCCTGATTTCCTTTATAGTGCATATCATTACAG
GAGATTGTCCTGCTTACCAACTTGTTTACTTGTCTGTTGTGTTTTCCCTGGTGAGCCTGA
GGGAGGGGACCCTGCCTGCCTCGTCCCCTGATGTTGCTCTGGGTTGGTGCCAGGTATGTG
TCTGGAGAAATCTGTTCACTGACTTGGGTCAGGGCTTGGGGAGATACTCACGGCGGATGG
CCCTCAGCCGAGGGATGATGCTGGGGCTGGCGGGGGGGCTGGCCCCATTGGATCCTTTCC
GCTTGTCCAGGGTTGGAGAGGCCTGGACTGTGATCTTATGTTCAAAGCCTGTGAAAAGAA
AGAGACTTCCCTGAACACATGGTTCCAGGGGTAGCCAAAGAGAAGGTCCCCTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTGGCCATAAACCTACTGCTCTCCCTCCCATTCCTTCTACTCCAGCCAAGTTGGCCTT
CCCTGCTGATAAACACCATGCTGTTCTTGCCTCTGGGCCTTCACCTTTGCTGTTCCCTCT
GCCAGGGATACTGTTCCTTCAGATCTCTGCATGTGTCCTTACCATGCGTGTCCCAGCTCA
CACCTCAGCTTTCTGATAGGCTTTCCTTGTGATTTTAAAAgagttccctggtggctcagt
gggttaaggattctggattgccattgcggtggctcaggtcactgctgtgacacaggtttg
atccctggcccggaaacttccacatgctgtggatgtggccAAAATAAATAAATAAATAAA
ACAGCAACTCTTCTGTTTTATTCCCTTCCCTGATTTCCTTTATAGTGCATATCATTACAG
GAGATTGTCCTGCTTACCAACTTGTTTACTTGTCTGTTGTGTTTTCCCTGGTGAGCCTGA
GGGAGGGGACCCTGCCTGCCTCGTCCCCTGATGTTGCTCTGGGTTGGTGCCAGGTATGTG
TCTGGAGAAATCTGTTCACTGACTTGGGTCAGGGCTTGGGGAGATACTCACGGCGGATGG
CCCTCAGCCGAGGGATGATGCTGGGGCTGGCGGGGGGGCTGGCCCCATTGGATCCTTTCC
GCTTGTCCAGGGTTGGAGAGGCCTGGACTGTGATCTTATGTTCAAAGCCTGTGAAAAGAA
AGAGACTTCCCTGAACACATGGTTCCAGGGGTAGCCAAAGAGAAGGTCCCCTTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               478-737, + strand, RNAz p=0.976503

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               478-737, + strand, RNAz p=0.976503

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-223, gnl|bosTau2|chr18 (41317729-41317498)
               


               
               358-773, gnl|bosTau2|chr18 (41317504-41317090)
               

               
               358-773, gnl|Hg17|chr19 (45407149-45406783)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-223, gnl|bosTau2|chr18 (41317729-41317498)
               


               
               358-773, gnl|bosTau2|chr18 (41317504-41317090)
               

               
               358-773, gnl|Hg17|chr19 (45407149-45406783)

	1-223, gnl\|bosTau2\|chr18 (41317729-41317498)

	358-773, gnl\|bosTau2\|chr18 (41317504-41317090)
	358-773, gnl\|Hg17\|chr19 (45407149-45406783)