Non-Coding RNA Search

Spl1-SPL010002H06

Sequence:


               
               CATTTTCCTATTCACCCTGTGACATCAGCCACCTTCTCTGTAGCTACAGTTTCTCTTCAC
TCAAATTAATCCCTGGCGATGAAAAATGAGCCTCTCCCCCACCCCTGCTGCCGCCCTTCA
CCTCACGCCCCCAGAGAAGAGTTTCTTCTTCGTGTGGCGGCCGGTGAAGGTTTTTTTCCA
AGTCACATGATCCAGGATGCAGGGGGAGAATCCTTCTTGGAACAGAGATGGGCCCAGACC
GACTCAGATGAGGAGAGATAAGGTGTGATGTGGGGAAGGCTATATAAGAATGGACCCAGG
GCTCCAGCAAGCATTCAACCCACTGGCCCCTTCTCAAGACACAGCCATGCATGTGCCCGC
AGGCTCCGTCACCAGCCACCTGGGAACCTCCAGCCGCGGTTACTTCTATTTCACCACGGC
CTCGCTGGCTCTGTGTCTCGTCTTTGCCGTGGTGACCATTATGGTGCTGGTAGTTCAGAA
GACGGTAAGTGGACTTCTCTTCTTTGCCTTTCCTTTCTGATTTATGTTCCGTTTTCTCCA
CAGAGACTTGGGGATAAGCTTAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTTCCTATTCACCCTGTGACATCAGCCACCTTCTCTGTAGCTACAGTTTCTCTTCAC
TCAAATTAATCCCTGGCGATGAAAAATGAGCCTCTCCCCCACCCCTGCTGCCGCCCTTCA
CCTCACGCCCCCAGAGAAGAGTTTCTTCTTCGTGTGGCGGCCGGTGAAGGTTTTTTTCCA
AGTCACATGATCCAGGATGCAGGGGGAGAATCCTTCTTGGAACAGAGATGGGCCCAGACC
GACTCAGATGAGGAGAGATAAGGTGTGATGTGGGGAAGGCTATATAAGAATGGACCCAGG
GCTCCAGCAAGCATTCAACCCACTGGCCCCTTCTCAAGACACAGCCATGCATGTGCCCGC
AGGCTCCGTCACCAGCCACCTGGGAACCTCCAGCCGCGGTTACTTCTATTTCACCACGGC
CTCGCTGGCTCTGTGTCTCGTCTTTGCCGTGGTGACCATTATGGTGCTGGTAGTTCAGAA
GACGGTAAGTGGACTTCTCTTCTTTGCCTTTCCTTTCTGATTTATGTTCCGTTTTCTCCA
CAGAGACTTGGGGATAAGCTTAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               160-278, + strand, RNAz p=0.648031

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-278, + strand, RNAz p=0.648031

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-570, gnl|bosTau2|chr8 (43496715-43497281)
               

               
               1-570, gnl|Hg17|chr9 (114772423-114771842)
               

               
               1-570, gnl|Mm7|chr4 (63295041-63294464)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-570, gnl|bosTau2|chr8 (43496715-43497281)
               

               
               1-570, gnl|Hg17|chr9 (114772423-114771842)
               

               
               1-570, gnl|Mm7|chr4 (63295041-63294464)

	1-570, gnl\|bosTau2\|chr8 (43496715-43497281)
	1-570, gnl\|Hg17\|chr9 (114772423-114771842)
	1-570, gnl\|Mm7\|chr4 (63295041-63294464)