Spl1-SPL010004D09
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTTTTGGGAGCTGCTGGCCGGACGGCAGGCCACACACTTGGGTGCGAGTCCTCCACGA ATGGGAGCTGCCTGGCTGCTGCTGCTGGTGTCCGAGCCGCGGCCCGGGGACGATGAGTTC CGGGAACGCGTCCTACCGCTGCTCTATGTCTTCCTCTGCGGATTTTTCCGATGAGGATGA TTTCAGCCAGAAATCTGGCTCTGCATCTCCAGCTCCTGGAGACACCTTACCTTGGAATTT GCCTAAACATGAGAGATCGAAGAGAAAGATCCACGGGGGCTCCGTGCTGGACCCCGCGGA GAGGGCAGTACTTCGGATAGCAGATGAACGGGACAAAGTTCAAAAGAAGACGTTTACAAA ATGGATAAATCAGCATCTCATGAAGGTTCGGAAACATGTGAACGACCTCTACGAAGACTT AAGGGACGGACACAATTTGATCTCTCTTTTAGAGGTTCTTTCGGGAGACACCTTGCCCCG AGAGAAAGGTCGGATGCGTTTTCACAGACTACAGAATGTACAAATTGCACTTGACTATTT GAAAAGACGCCAGGTGAAATTAGTGAATATTAGAAATGATGACATAACAGATGGAAATCC CAAATTGACTTTGGGATTAATATGGACAATAATTTTGCACTTTCAGATATCTGATATCCA TGTTACTGGAGAATCAGAGGACATGTCTGCAAAAGAGAGGCTGTTACTGTGGACACAGCA GGCGACCGAGGGCTACGCGGGGATTCGGTGTGAAAACTTCACCACCTGCTGGAGAGATGG AAAACTCTTTAATGCCATCATTCACAAATACAGGTACGGAATTTGCATGTTTGCTTTTTT TTTTTTTTCCCCTTAGACAACTAAGAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTTTTGGGAGCTGCTGGCCGGACGGCAGGCCACACACTTGGGTGCGAGTCCTCCACGA ATGGGAGCTGCCTGGCTGCTGCTGCTGGTGTCCGAGCCGCGGCCCGGGGACGATGAGTTC CGGGAACGCGTCCTACCGCTGCTCTATGTCTTCCTCTGCGGATTTTTCCGATGAGGATGA TTTCAGCCAGAAATCTGGCTCTGCATCTCCAGCTCCTGGAGACACCTTACCTTGGAATTT GCCTAAACATGAGAGATCGAAGAGAAAGATCCACGGGGGCTCCGTGCTGGACCCCGCGGA GAGGGCAGTACTTCGGATAGCAGATGAACGGGACAAAGTTCAAAAGAAGACGTTTACAAA ATGGATAAATCAGCATCTCATGAAGGTTCGGAAACATGTGAACGACCTCTACGAAGACTT AAGGGACGGACACAATTTGATCTCTCTTTTAGAGGTTCTTTCGGGAGACACCTTGCCCCG AGAGAAAGGTCGGATGCGTTTTCACAGACTACAGAATGTACAAATTGCACTTGACTATTT GAAAAGACGCCAGGTGAAATTAGTGAATATTAGAAATGATGACATAACAGATGGAAATCC CAAATTGACTTTGGGATTAATATGGACAATAATTTTGCACTTTCAGATATCTGATATCCA TGTTACTGGAGAATCAGAGGACATGTCTGCAAAAGAGAGGCTGTTACTGTGGACACAGCA GGCGACCGAGGGCTACGCGGGGATTCGGTGTGAAAACTTCACCACCTGCTGGAGAGATGG AAAACTCTTTAATGCCATCATTCACAAATACAGGTACGGAATTTGCATGTTTGCTTTTTT TTTTTTTTCCCCTTAGACAACTAAGAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 115-273, - strand, RNAz p=0.996471 | |
| 160-279, - strand, RNAz p=0.688023 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 115-273, - strand, RNAz p=0.996471 | |
| 160-279, - strand, RNAz p=0.688023 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 115-323, gnl|bosTau2|chr23 (1868342-1868134) | |
| 115-323, gnl|canFam2|chr12 (27079320-27079540) | |
| 115-323, gnl|danRer3|chr14 (22807200-22806981) | |
| 115-323, gnl|dasNov1|scaffold_32876 (1408-1188) | |
| 115-323, gnl|echTel1|scaffold_324919 (3258-3038) | |
| 115-323, gnl|fr1|chrUn (83410865-83411083) | |
| 115-323, gnl|hg17|chr6 (56824142-56824362) | |
| 115-323, gnl|Hg17|chr6 (56824362-56824154) | |
| 115-323, gnl|loxAfr1|scaffold_28787 (2973-3193) | |
| 115-323, gnl|mm7|chr1 (34229630-34229416) | |
| 115-323, gnl|Mm7|chr1 (34229414-34229622) | |
| 115-323, gnl|monDom2|scaffold_0 (178579745-178579525) | |
| 115-323, gnl|oryCun1|scaffold_64921 (3847-3627) | |
| 115-323, gnl|panTro1|chr5 (58120668-58120888) | |
| 115-323, gnl|rheMac2|chr4 (56481764-56481984) | |
| 115-323, gnl|rn3|chr9 (32753386-32753172) | |
| 115-323, gnl|tetNig1|chr17 (4298114-4297902) | |
| 115-323, gnl|xenTro1|scaffold_833 (421717-421937) | |
| 642-839, gnl|bosTau2|chr23 (1633197-1632998) | |
| 642-839, gnl|canFam2|chr12 (26908036-26908282) | |
| 642-839, gnl|danRer3|chr14 (22883283-22883075) | |
| 642-839, gnl|dasNov1|scaffold_61 (227695-227943) | |
| 642-839, gnl|echTel1|scaffold_309957 (5975-5733) | |
| 642-839, gnl|fr1|chrUn (83394962-83395133) | |
| 642-839, gnl|galGal2|chr3 (85284213-85284004) | |
| 642-839, gnl|hg17|chr6 (56643363-56643610) | |
| 642-839, gnl|Hg17|chr6 (56643569-56643370) | |
| 642-839, gnl|loxAfr1|scaffold_17020 (1395-1146) | |
| 642-839, gnl|mm7|chr1 (34358517-34358274) | |
| 642-839, gnl|Mm7|chr1 (34358309-34358503) | |
| 642-839, gnl|monDom2|scaffold_0 (178764956-178764731) | |
| 642-839, gnl|oryCun1|scaffold_213250 (59247-59494) | |
| 642-839, gnl|panTro1|chr5 (57935726-57935973) | |
| 642-839, gnl|rheMac2|chr4 (56303729-56303976) | |
| 642-839, gnl|rn3|chr9 (32879092-32878845) | |
| 642-839, gnl|tetNig1|chr17 (4314181-4314010) | |
| 642-839, gnl|xenTro1|scaffold_833 (339003-339227) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 115-323, gnl|bosTau2|chr23 (1868342-1868134) | |
| 115-323, gnl|canFam2|chr12 (27079320-27079540) | |
| 115-323, gnl|danRer3|chr14 (22807200-22806981) | |
| 115-323, gnl|dasNov1|scaffold_32876 (1408-1188) | |
| 115-323, gnl|echTel1|scaffold_324919 (3258-3038) | |
| 115-323, gnl|fr1|chrUn (83410865-83411083) | |
| 115-323, gnl|hg17|chr6 (56824142-56824362) | |
| 115-323, gnl|Hg17|chr6 (56824362-56824154) | |
| 115-323, gnl|loxAfr1|scaffold_28787 (2973-3193) | |
| 115-323, gnl|mm7|chr1 (34229630-34229416) | |
| 115-323, gnl|Mm7|chr1 (34229414-34229622) | |
| 115-323, gnl|monDom2|scaffold_0 (178579745-178579525) | |
| 115-323, gnl|oryCun1|scaffold_64921 (3847-3627) | |
| 115-323, gnl|panTro1|chr5 (58120668-58120888) | |
| 115-323, gnl|rheMac2|chr4 (56481764-56481984) | |
| 115-323, gnl|rn3|chr9 (32753386-32753172) | |
| 115-323, gnl|tetNig1|chr17 (4298114-4297902) | |
| 115-323, gnl|xenTro1|scaffold_833 (421717-421937) | |
| 642-839, gnl|bosTau2|chr23 (1633197-1632998) | |
| 642-839, gnl|canFam2|chr12 (26908036-26908282) | |
| 642-839, gnl|danRer3|chr14 (22883283-22883075) | |
| 642-839, gnl|dasNov1|scaffold_61 (227695-227943) | |
| 642-839, gnl|echTel1|scaffold_309957 (5975-5733) | |
| 642-839, gnl|fr1|chrUn (83394962-83395133) | |
| 642-839, gnl|galGal2|chr3 (85284213-85284004) | |
| 642-839, gnl|hg17|chr6 (56643363-56643610) | |
| 642-839, gnl|Hg17|chr6 (56643569-56643370) | |
| 642-839, gnl|loxAfr1|scaffold_17020 (1395-1146) | |
| 642-839, gnl|mm7|chr1 (34358517-34358274) | |
| 642-839, gnl|Mm7|chr1 (34358309-34358503) | |
| 642-839, gnl|monDom2|scaffold_0 (178764956-178764731) | |
| 642-839, gnl|oryCun1|scaffold_213250 (59247-59494) | |
| 642-839, gnl|panTro1|chr5 (57935726-57935973) | |
| 642-839, gnl|rheMac2|chr4 (56303729-56303976) | |
| 642-839, gnl|rn3|chr9 (32879092-32878845) | |
| 642-839, gnl|tetNig1|chr17 (4314181-4314010) | |
| 642-839, gnl|xenTro1|scaffold_833 (339003-339227) |