Non-Coding RNA Search

Spl1-SPL010005C11

Sequence:


               
               CGTTCCAGCGGTAATTCTGGAGGAAGCATGCAGACATGAGCAGATTTTTCCAGAGGATGA
TCGCCCTTGCAGATGTGCACATGCTTCCTCCTGCAGCTCATTTTGCTTCTCCTCTTATTC
ACTTTTCCCCAGTTGTGGCTTCCCTCTGCCACCTAGACTGCACCCCGCGACCCCCAGGAC
TCCCACCACTTGACCTCCTGTCCTCTCCCTCTTGCCAACTCATCCCAATCGATGTCCTGC
ACACCCTTCCCACCAGCGGTCACCTCCCCCCAGTTTTGTGGCAATTCTCCCTCTTGAACC
AACAGCCAGACTCAGCTGTTAGGTATCTGAACGACTTCACCTGCATTTTGCAAGCTAACT
AACAAGATAGGTCTGTTTTTTCCACCTGGACAAAGCTCTAGGCCCGCCTTTTAAAAATTC
AGTTCTTTGGTAATGTTTTCAGATTCAAGAAAACAGACAATCGGATCTTTCTTGAAGCAT
TTCATTTTGCACTGAGGGCAGGGTGAAGGCATTTGAGTAGGTGCTGTTTTCCTTACAACT
GAGACCAACTGCAGATTCCTTTGAGATGGCTAATGTCAAGAGATATTTCTCTAGAAACTT
TTTCTCAACACAGAAATAGTTGCAAGAGCATTAGATTGAATGCTCTTTTAAAAGTCATTA
GAGGTATTTAGGATGCAGTGGGTTGAGGATCTGGCATTGTCTCTGGGGCGGTGTGGGTTG
ATCCTGGCTCAGCACAGTGGGTTAAAAGGTTACGGCGTTGCCTGCTGCATCTGTGGCTCA
GCTTCGATTTCTGGCCTGGGAACCTCCACACAGAGGGAGGGAAGGAAGGAAGGAGAGAAA
GAAAGAAAATGTGAGGTTCGTCTTCTCTGCGCTTTCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTTCCAGCGGTAATTCTGGAGGAAGCATGCAGACATGAGCAGATTTTTCCAGAGGATGA
TCGCCCTTGCAGATGTGCACATGCTTCCTCCTGCAGCTCATTTTGCTTCTCCTCTTATTC
ACTTTTCCCCAGTTGTGGCTTCCCTCTGCCACCTAGACTGCACCCCGCGACCCCCAGGAC
TCCCACCACTTGACCTCCTGTCCTCTCCCTCTTGCCAACTCATCCCAATCGATGTCCTGC
ACACCCTTCCCACCAGCGGTCACCTCCCCCCAGTTTTGTGGCAATTCTCCCTCTTGAACC
AACAGCCAGACTCAGCTGTTAGGTATCTGAACGACTTCACCTGCATTTTGCAAGCTAACT
AACAAGATAGGTCTGTTTTTTCCACCTGGACAAAGCTCTAGGCCCGCCTTTTAAAAATTC
AGTTCTTTGGTAATGTTTTCAGATTCAAGAAAACAGACAATCGGATCTTTCTTGAAGCAT
TTCATTTTGCACTGAGGGCAGGGTGAAGGCATTTGAGTAGGTGCTGTTTTCCTTACAACT
GAGACCAACTGCAGATTCCTTTGAGATGGCTAATGTCAAGAGATATTTCTCTAGAAACTT
TTTCTCAACACAGAAATAGTTGCAAGAGCATTAGATTGAATGCTCTTTTAAAAGTCATTA
GAGGTATTTAGGATGCAGTGGGTTGAGGATCTGGCATTGTCTCTGGGGCGGTGTGGGTTG
ATCCTGGCTCAGCACAGTGGGTTAAAAGGTTACGGCGTTGCCTGCTGCATCTGTGGCTCA
GCTTCGATTTCTGGCCTGGGAACCTCCACACAGAGGGAGGGAAGGAAGGAAGGAGAGAAA
GAAAGAAAATGTGAGGTTCGTCTTCTCTGCGCTTTCTTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               44-154, - strand, RNAz p=0.620573

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-154, - strand, RNAz p=0.620573

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               6-678, gnl|bosTau2|chr6 (31005497-31006141)
               

               
               6-678, gnl|Hg17|chr4 (41498525-41499378)
               

               
               6-678, gnl|Mm7|chr5 (66365739-66366375)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-678, gnl|bosTau2|chr6 (31005497-31006141)
               

               
               6-678, gnl|Hg17|chr4 (41498525-41499378)
               

               
               6-678, gnl|Mm7|chr5 (66365739-66366375)

	6-678, gnl\|bosTau2\|chr6 (31005497-31006141)
	6-678, gnl\|Hg17\|chr4 (41498525-41499378)
	6-678, gnl\|Mm7\|chr5 (66365739-66366375)