Non-Coding RNA Search

Spl1-SPL010008H08

Sequence:


               
               TTCTCAGGGGAATGTGGTAACGGCGAAAATTTTTTGTTCTTTAAGACTCAGCACTTTATG
TGCTAAGGTTCTGTCACCAGCCCCTGAGAGTTGTTAGATAGGATAAATAAAGATATTGCA
CATGCTTATTAATAATCTAGGCTTCACACTTTGTCCACAGATTTATTTGTGGAGATGGTA
AATTTAGCATCCCACCATAAGATTACAGATTAGAGACAAAATCATTTCTCTCCAGTATTG
TCACTGGCCATATACTTAGATGCTTCCAATTGGTTCTTTTCTTGGTCTCTATAAGGACTT
TCCATGGAAACACCCAAAACAGCAGGAGGGAGACATATGACATGAGCAAATGACTTAGAA
ACAGCATATTGGACCTCTCATATACCTGGCATTCTGAAACATAATATTTACGTAGCACAC
AATGTGCTCCCTGCCCTGCCTTGAGTGCGTAGAAGACAAAAGAAGGGAAATCTGCAGCCC
CCGCCCTCACGAAAATGCTAGGCTTCCAGAATCGCTAAAGATGGCAGGCAAGATAACTTA
GTGCCTCAAGAGTCTGAACTTGGAGTGATTGCCTGGGTTTGATCTGGGCCTTTGGCTAAG
CCTCAGTTTCCTTCCTTGAAAGGTGAAGACAGggagttcccattgtggctcagcaggtta
agaacctgactagtgtccatgaggatgcgggttcaaatcccgacctgcacagaaggtcaa
ggatccagcgtggccacaagctgtcgtgtaggttgcagatgtggctcagatctggcattg
ctgtggcC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTCAGGGGAATGTGGTAACGGCGAAAATTTTTTGTTCTTTAAGACTCAGCACTTTATG
TGCTAAGGTTCTGTCACCAGCCCCTGAGAGTTGTTAGATAGGATAAATAAAGATATTGCA
CATGCTTATTAATAATCTAGGCTTCACACTTTGTCCACAGATTTATTTGTGGAGATGGTA
AATTTAGCATCCCACCATAAGATTACAGATTAGAGACAAAATCATTTCTCTCCAGTATTG
TCACTGGCCATATACTTAGATGCTTCCAATTGGTTCTTTTCTTGGTCTCTATAAGGACTT
TCCATGGAAACACCCAAAACAGCAGGAGGGAGACATATGACATGAGCAAATGACTTAGAA
ACAGCATATTGGACCTCTCATATACCTGGCATTCTGAAACATAATATTTACGTAGCACAC
AATGTGCTCCCTGCCCTGCCTTGAGTGCGTAGAAGACAAAAGAAGGGAAATCTGCAGCCC
CCGCCCTCACGAAAATGCTAGGCTTCCAGAATCGCTAAAGATGGCAGGCAAGATAACTTA
GTGCCTCAAGAGTCTGAACTTGGAGTGATTGCCTGGGTTTGATCTGGGCCTTTGGCTAAG
CCTCAGTTTCCTTCCTTGAAAGGTGAAGACAGggagttcccattgtggctcagcaggtta
agaacctgactagtgtccatgaggatgcgggttcaaatcccgacctgcacagaaggtcaa
ggatccagcgtggccacaagctgtcgtgtaggttgcagatgtggctcagatctggcattg
ctgtggcC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-118, - strand, RNAz p=0.986283

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.986283

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-504, gnl|bosTau2|chr13 (20256076-20255575)
               

               
               1-504, gnl|Hg17|chr10 (16685020-16684520)
               

               
               1-504, gnl|Mm7|chr2 (13023126-13022668)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-504, gnl|bosTau2|chr13 (20256076-20255575)
               

               
               1-504, gnl|Hg17|chr10 (16685020-16684520)
               

               
               1-504, gnl|Mm7|chr2 (13023126-13022668)

	1-504, gnl\|bosTau2\|chr13 (20256076-20255575)
	1-504, gnl\|Hg17\|chr10 (16685020-16684520)
	1-504, gnl\|Mm7\|chr2 (13023126-13022668)