Non-Coding RNA Search

Spl1-SPL010010D04

Sequence:


               
               ACTATGTTCCTGAGGGTTAGGATTTTAACATATGAATTCTGTAGAAAACGATTCAGCTTC
TCTCAGCCTTGTAAAGCAGCAAGGGAAAGTTTGGACTTTGTCATCAGAGTTTTTATTAAG
ATCATGGAAGATGTTTATGAAAGCACTTCACCAACTGTGAAGTACAACACAGATGTGCAC
TATTGCTGTTGTAATTGCTGTGTGTTTTTTTACAACTTCTCAGCCTGTTCCTTCCAGTTT
CCCTCTGATTTTGGACATTGCAGAGGAGGCTGTGCAGAAAGTATGAAGGAGGCCGGATGT
TTCTGCTTCCATAAGATTATTAAGTGAGAAAGAATAAGCTGCCCTTAGTGTAGTCGTCTA
AAGAATTAGGATCTACTAATTAATTTCTGATTTTCTGAGGGAATCCAAGAAACTTCCTCC
AGGATTTTTATTGGGCTTATTAAGACTCAGTCTTGTACTCAAGGCCACTGGGCTTCTGTA
TGAAATTGAAATGTTCTTTTAAAGGAAAACTAGCAGCTTCCATTCTATGCTTAAATGAAA
AAGCCCAAGGCCCACTCTTTGGAATGTCAGATTTAAAATATAGAAAAAGTATTATAGgga
gttcccgtcatggtgcagcggaaacgaatctgactaggaaccacgaggttgccggttcaa
tccctggcctcactcagtgggttaaggatccggcgttgccgtgagctgtgg

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTATGTTCCTGAGGGTTAGGATTTTAACATATGAATTCTGTAGAAAACGATTCAGCTTC
TCTCAGCCTTGTAAAGCAGCAAGGGAAAGTTTGGACTTTGTCATCAGAGTTTTTATTAAG
ATCATGGAAGATGTTTATGAAAGCACTTCACCAACTGTGAAGTACAACACAGATGTGCAC
TATTGCTGTTGTAATTGCTGTGTGTTTTTTTACAACTTCTCAGCCTGTTCCTTCCAGTTT
CCCTCTGATTTTGGACATTGCAGAGGAGGCTGTGCAGAAAGTATGAAGGAGGCCGGATGT
TTCTGCTTCCATAAGATTATTAAGTGAGAAAGAATAAGCTGCCCTTAGTGTAGTCGTCTA
AAGAATTAGGATCTACTAATTAATTTCTGATTTTCTGAGGGAATCCAAGAAACTTCCTCC
AGGATTTTTATTGGGCTTATTAAGACTCAGTCTTGTACTCAAGGCCACTGGGCTTCTGTA
TGAAATTGAAATGTTCTTTTAAAGGAAAACTAGCAGCTTCCATTCTATGCTTAAATGAAA
AAGCCCAAGGCCCACTCTTTGGAATGTCAGATTTAAAATATAGAAAAAGTATTATAGgga
gttcccgtcatggtgcagcggaaacgaatctgactaggaaccacgaggttgccggttcaa
tccctggcctcactcagtgggttaaggatccggcgttgccgtgagctgtgg

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               125-241, - strand, RNAz p=0.979983

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               125-241, - strand, RNAz p=0.979983

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-624, gnl|bosTau2|chr13 (12626214-12625597)
               

               
               8-624, gnl|Hg17|chr10 (24128189-24128809)
               

               
               8-624, gnl|Mm7|chr2 (20096485-20097054)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-624, gnl|bosTau2|chr13 (12626214-12625597)
               

               
               8-624, gnl|Hg17|chr10 (24128189-24128809)
               

               
               8-624, gnl|Mm7|chr2 (20096485-20097054)

	8-624, gnl\|bosTau2\|chr13 (12626214-12625597)
	8-624, gnl\|Hg17\|chr10 (24128189-24128809)
	8-624, gnl\|Mm7\|chr2 (20096485-20097054)