Spl1-SPL010011E10
|
GGTAAACTAATTCATTCCTGTGATGAATCATGCAAACTGGTTAGAATTCCCAGATACACC
TGAATTTTTAAAGGAGGGATGGAAATTTAGACAAGTCTTATTGACTGAGCGCTTGCTATT
TTTCAGATAGCTGTGCAAAATATGTCTACCTATTTGGTTTCTTTTTTCCTTATAATAATA
CTGTAAAATGAAATTTTCCATATAAGAATCCAGAGTCAGACATTTGCAGCCATGTGAATA
TTCAAATCCAAATTTTCCAGTAACAAATAATCTCTGGTTAGTAAAAATTTTAGTTTATCA
AAATAAAATGAAAACATTAAGGCTTTTTAGAGAAGATTTTTTTTTTAAGTAGAACAAATA
AGGCAGTGCAACATGAGGTCATTTTCTAGCCTATTTCTACAGCTTGTGCCCTTTGTTCAT
TTTGGAAATCACATTAAGTACATGGATGCACCAAAATAATAATAAAACAGCTCCTCTCTG
ATGGCAAATGGAGGAACACATGTTTAGACTTGTAATGTCATTTTGAAGCCAAATGTAGTC
AGACGCTATCTATCCTGAGTTCAAAAAGCATGTTAAGAAAAATTCCTAACCGAGGAAGGT
GATGTTGAAGAGGAACTTAAGTTCTGGAGGGAACTACAATATATGAATAGAGTATTTTCC
AGCAGTTTTATTGAACTAGTGTTGCTGTATTAATTGTGTTTACCTTACTGTCCACCTCGT
GTTGTGTCTCTGGTTGGTTGTGAATTCTCTGAGTGCAGGGATCATGTCTTTTGTTTCTTT
AGTCTTCCTAGTGGTCTCTTGCCTAACATTGGACAGATA
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Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGTAAACTAATTCATTCCTGTGATGAATCATGCAAACTGGTTAGAATTCCCAGATACACC
TGAATTTTTAAAGGAGGGATGGAAATTTAGACAAGTCTTATTGACTGAGCGCTTGCTATT
TTTCAGATAGCTGTGCAAAATATGTCTACCTATTTGGTTTCTTTTTTCCTTATAATAATA
CTGTAAAATGAAATTTTCCATATAAGAATCCAGAGTCAGACATTTGCAGCCATGTGAATA
TTCAAATCCAAATTTTCCAGTAACAAATAATCTCTGGTTAGTAAAAATTTTAGTTTATCA
AAATAAAATGAAAACATTAAGGCTTTTTAGAGAAGATTTTTTTTTTAAGTAGAACAAATA
AGGCAGTGCAACATGAGGTCATTTTCTAGCCTATTTCTACAGCTTGTGCCCTTTGTTCAT
TTTGGAAATCACATTAAGTACATGGATGCACCAAAATAATAATAAAACAGCTCCTCTCTG
ATGGCAAATGGAGGAACACATGTTTAGACTTGTAATGTCATTTTGAAGCCAAATGTAGTC
AGACGCTATCTATCCTGAGTTCAAAAAGCATGTTAAGAAAAATTCCTAACCGAGGAAGGT
GATGTTGAAGAGGAACTTAAGTTCTGGAGGGAACTACAATATATGAATAGAGTATTTTCC
AGCAGTTTTATTGAACTAGTGTTGCTGTATTAATTGTGTTTACCTTACTGTCCACCTCGT
GTTGTGTCTCTGGTTGGTTGTGAATTCTCTGAGTGCAGGGATCATGTCTTTTGTTTCTTT
AGTCTTCCTAGTGGTCTCTTGCCTAACATTGGACAGATA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
42-179, BP158281 full-length enriched swine cDNA library, adult spleen Sus
(dbj|BP158281.1|), blast E-value=0, identity=100% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
42-179, BP158281 full-length enriched swine cDNA library, adult spleen Sus
(dbj|BP158281.1|), blast E-value=0, identity=100% |
|
3-179, gnl|bosTau2|chr16 (42111797-42111618) |
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3-179, gnl|canFam2|chr7 (16864002-16864164) |
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3-179, gnl|hg17|chr1 (177071964-177072126) |
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3-179, gnl|Hg17|chr1 (177072146-177071968) |
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3-179, gnl|oryCun1|scaffold_112101 (2215-2393) |
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3-179, gnl|panTro1|chr1 (159441453-159441615) |
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3-179, gnl|rheMac2|chr1 (190365855-190365691) |
| |
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566-819, gnl|bosTau2|chr16 (42111520-42111272) |
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566-819, gnl|canFam2|chr7 (16862991-16863281) |
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566-819, gnl|dasNov1|scaffold_188299 (912-1156) |
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566-819, gnl|hg17|chr1 (177071046-177071361) |
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566-819, gnl|loxAfr1|scaffold_43432 (11067-10755) |
|
566-819, gnl|oryCun1|scaffold_173651 (10133-10450) |
|
566-819, gnl|panTro1|chr1 (159440548-159440863) |
|
566-819, gnl|rheMac2|chr1 (190366783-190366471) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-179, gnl|bosTau2|chr16 (42111797-42111618) |
|
3-179, gnl|canFam2|chr7 (16864002-16864164) |
|
3-179, gnl|hg17|chr1 (177071964-177072126) |
|
3-179, gnl|Hg17|chr1 (177072146-177071968) |
|
3-179, gnl|oryCun1|scaffold_112101 (2215-2393) |
|
3-179, gnl|panTro1|chr1 (159441453-159441615) |
|
3-179, gnl|rheMac2|chr1 (190365855-190365691) |
| |
|
566-819, gnl|bosTau2|chr16 (42111520-42111272) |
|
566-819, gnl|canFam2|chr7 (16862991-16863281) |
|
566-819, gnl|dasNov1|scaffold_188299 (912-1156) |
|
566-819, gnl|hg17|chr1 (177071046-177071361) |
|
566-819, gnl|loxAfr1|scaffold_43432 (11067-10755) |
|
566-819, gnl|oryCun1|scaffold_173651 (10133-10450) |
|
566-819, gnl|panTro1|chr1 (159440548-159440863) |
|
566-819, gnl|rheMac2|chr1 (190366783-190366471) |
