Non-Coding RNA Search

Spl1-SPL010015A01

Sequence:


               
               TGGCTTTGTCTGTGATGCATAATATATGTGCGTGTGTGAGTATGTGTACGTAGGTTCCCC
CAGCACGGATGTATATATAACTTTTTCCCCCAAAGAGAGATTTATTTCAGGGAACAAATG
CTTCTGGTTAGCTTCTGTGTGGATGCGATCCAGCCCCGAGCCGTTGCCATGAGTCGAATT
CATTGACGGCAAAAGGAAATGAAAACAAACGTTCCCTGACATGGGGCATTTCCGTTGGGG
GCCTCTGGGAATTCTCTCCTCTATTAAAATATCCACCAAATTGGACGGAGGAACTTGGCA
GCCACGGCCTGAGCTCTCTAATTGTTTCTGCAAGGAGGGCATGGGCAGAAGCTGTGTGCT
GGCCTCTCTTCCGGAACCTTCCTCTTGCCTTGGCCGCGTGGGAGGAACGGGGGTCGCCTG
AGATGGGGCATGGCTCGTGCTGCTGGCATCTGGCTTCTCCCGTCAGGTCCCGGCAGGTGC
CCCCGGATGGTGAGGGTCAGGGAGAGAGCCCTTGGTGCCTGGCCTTCTGGAAGCTGCTCT
TTGGAAAAGTTTGGGGTGGGGGGTGGTGCTGGGAGCTCAGATTCCTGAGATGGTCTGAAG
ACTTCCGCGCAGCCCCAGCAGACAGACCGCGAATGCGGTTTTGATCACAACCAGCTGATG
GGAGCTGACCCAGACTTTGTGCAATTTGACTGTTTTTCGGGTTTTGTTTTTTTCCATCTC
CCTCCTCTTCCTTATGGGGAAGACGCTCCTCTTGTGAATGAGTTTGCCTCAGGGGACTAG
AGGTCAGGGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCTTTGTCTGTGATGCATAATATATGTGCGTGTGTGAGTATGTGTACGTAGGTTCCCC
CAGCACGGATGTATATATAACTTTTTCCCCCAAAGAGAGATTTATTTCAGGGAACAAATG
CTTCTGGTTAGCTTCTGTGTGGATGCGATCCAGCCCCGAGCCGTTGCCATGAGTCGAATT
CATTGACGGCAAAAGGAAATGAAAACAAACGTTCCCTGACATGGGGCATTTCCGTTGGGG
GCCTCTGGGAATTCTCTCCTCTATTAAAATATCCACCAAATTGGACGGAGGAACTTGGCA
GCCACGGCCTGAGCTCTCTAATTGTTTCTGCAAGGAGGGCATGGGCAGAAGCTGTGTGCT
GGCCTCTCTTCCGGAACCTTCCTCTTGCCTTGGCCGCGTGGGAGGAACGGGGGTCGCCTG
AGATGGGGCATGGCTCGTGCTGCTGGCATCTGGCTTCTCCCGTCAGGTCCCGGCAGGTGC
CCCCGGATGGTGAGGGTCAGGGAGAGAGCCCTTGGTGCCTGGCCTTCTGGAAGCTGCTCT
TTGGAAAAGTTTGGGGTGGGGGGTGGTGCTGGGAGCTCAGATTCCTGAGATGGTCTGAAG
ACTTCCGCGCAGCCCCAGCAGACAGACCGCGAATGCGGTTTTGATCACAACCAGCTGATG
GGAGCTGACCCAGACTTTGTGCAATTTGACTGTTTTTCGGGTTTTGTTTTTTTCCATCTC
CCTCCTCTTCCTTATGGGGAAGACGCTCCTCTTGTGAATGAGTTTGCCTCAGGGGACTAG
AGGTCAGGGCGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               697-788, - strand, RNAz p=0.633228

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               697-788, - strand, RNAz p=0.633228

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-788, gnl|bosTau2|chr19 (4124933-4124147)
               

               
               5-788, gnl|Hg17|chr17 (52905645-52906420)
               

               
               5-788, gnl|Mm7|chr11 (88599168-88598416)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-788, gnl|bosTau2|chr19 (4124933-4124147)
               

               
               5-788, gnl|Hg17|chr17 (52905645-52906420)
               

               
               5-788, gnl|Mm7|chr11 (88599168-88598416)

	5-788, gnl\|bosTau2\|chr19 (4124933-4124147)
	5-788, gnl\|Hg17\|chr17 (52905645-52906420)
	5-788, gnl\|Mm7\|chr11 (88599168-88598416)