Non-Coding RNA Search

Spl1-SPL010021D05

Sequence:


               
               ATAAAGATATCAGGTCTCAGGGAGTTCCCGCTCAGTGGGTTAAGGAGCCGATGTCTCTGT
GAGGATGCAGGTTCTATCCCTGGCCTCGCGTTGCCTCAAGCTGATATGgatgtggctccg
aacctgagttgtgtggctctggtgcaggccagcagctgcggctctgatttgacccctagc
ctgggaacctccatatgccgcgggagcggcccaagaaatagCAACAACAACAACAACAAC
AACAAAAAGACAAAAGACAAAAAAAAAAAAAAGAATGAACATGGGGACGtccctggtggc
cccagtgggttaaggatcccacattgtcactactgtggcttgggtcactgccgtggtgca
gattccatccctggcctggcagcttcgatatgcagtgggTGCAGCAAAACAGAAGAAGGA
AGGAAGGAAAAAAGCAAGCGAGAAAAACAAAGTGCATATGATACAGGTTTTTATACTGTA
AAAAAAGCACATGCTGACATAATTTTTCTCCTCATGCATTCAAAAGCAAAACCTGTAAAC
TTGGAGAGAATGCAGAGGCCCCATCCTTGAGCTCACACCCACAGAATGTTTTAAATATGG
TTTTGAAATGCCAGCAGAGGCAGGACAGAATTTTCAGTAATTCAGGATTTAATTGGTTCG
AATAAAAGACAGAGGACTTACCCTCTAACTCACCCCATGGACACTTCCTGCCATGAGCCT
TTATAAAGCCAGGCTTGGCATCTACCCAGATTTAGCTCAGACGAGCCTGCAGAACCCGAA
GTGTTTGTGGTGGGCAGCGCTGAAGGCAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAAGATATCAGGTCTCAGGGAGTTCCCGCTCAGTGGGTTAAGGAGCCGATGTCTCTGT
GAGGATGCAGGTTCTATCCCTGGCCTCGCGTTGCCTCAAGCTGATATGgatgtggctccg
aacctgagttgtgtggctctggtgcaggccagcagctgcggctctgatttgacccctagc
ctgggaacctccatatgccgcgggagcggcccaagaaatagCAACAACAACAACAACAAC
AACAAAAAGACAAAAGACAAAAAAAAAAAAAAGAATGAACATGGGGACGtccctggtggc
cccagtgggttaaggatcccacattgtcactactgtggcttgggtcactgccgtggtgca
gattccatccctggcctggcagcttcgatatgcagtgggTGCAGCAAAACAGAAGAAGGA
AGGAAGGAAAAAAGCAAGCGAGAAAAACAAAGTGCATATGATACAGGTTTTTATACTGTA
AAAAAAGCACATGCTGACATAATTTTTCTCCTCATGCATTCAAAAGCAAAACCTGTAAAC
TTGGAGAGAATGCAGAGGCCCCATCCTTGAGCTCACACCCACAGAATGTTTTAAATATGG
TTTTGAAATGCCAGCAGAGGCAGGACAGAATTTTCAGTAATTCAGGATTTAATTGGTTCG
AATAAAAGACAGAGGACTTACCCTCTAACTCACCCCATGGACACTTCCTGCCATGAGCCT
TTATAAAGCCAGGCTTGGCATCTACCCAGATTTAGCTCAGACGAGCCTGCAGAACCCGAA
GTGTTTGTGGTGGGCAGCGCTGAAGGCAGCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               687-805, + strand, RNAz p=0.840515

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               687-805, + strand, RNAz p=0.840515

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               450-809, gnl|bosTau2|chr29 (792502-792857)
               

               
               450-809, gnl|Hg17|chr11 (92157022-92157381)
               

               
               450-809, gnl|Mm7|chr9 (15856093-15855760)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               450-809, gnl|bosTau2|chr29 (792502-792857)
               

               
               450-809, gnl|Hg17|chr11 (92157022-92157381)
               

               
               450-809, gnl|Mm7|chr9 (15856093-15855760)

	450-809, gnl\|bosTau2\|chr29 (792502-792857)
	450-809, gnl\|Hg17\|chr11 (92157022-92157381)
	450-809, gnl\|Mm7\|chr9 (15856093-15855760)