Non-Coding RNA Search

Spl1-SPL010022A10

Sequence:


               
               TCCTGCTGAAGAGAGAGAATTGAGCATAGGCCTGCGAGCAAAGGGGAGAGGGAAGGAGGT
AAGAGAAAGCGAAGGAGGCAGGGAAGCAAAGCTGGGGCTTGCCAGCACCTGTCCCCAGTG
ACCCCAGCTACCCTGGGCGGTGGGGCAGTGGGGCGGTGAGCCACCGATGAGTGCGTTCTG
GCCCAGGAGGAGGAGCCCCAGGCATTCTAGGGTGAGAGAGTTACACTCACCGCTGGGGTT
GCACCTCCCTGGTCGGGAGGGGAAAATGACATCAGCTGTGGGGAGAGAAAGACTCCGTCC
TTCACTGGCTCCCTGTTCCTAACATCCTCTAATAGGTACAGTCACACCCCTGAGCATCTG
TTCCCATGCCTTAGTACTGAGCTGGTCACCCCTATCCTTCCCCCTGCCTAGATGATAAAC
TTCCTAAAAGAAAATGAGTTATGCCTCCGGGGTATAGCAACCAGCTCTAGGTACAATCAG
GGCTCAGCCCCAGATGGCCGAGACTGATGGTGATGCAGCCCGAGTTGGCCCTTCCCACCC
AGCCGTCTCAGCGCTCCCCGTGTCACCCAGGGACCACAGTGTCTGGGATCCCAGGCACAC
AAGGAGAGGAGGGATAACAGGGCATCTTTTAGggagttcctgttgtggctcagcgggtta
tgaacccgactagtatctgtgaggacgtgggttctatccctggtgtctctcagtgggtta
aggatccggtgttgccatgagctatggtgt

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTGCTGAAGAGAGAGAATTGAGCATAGGCCTGCGAGCAAAGGGGAGAGGGAAGGAGGT
AAGAGAAAGCGAAGGAGGCAGGGAAGCAAAGCTGGGGCTTGCCAGCACCTGTCCCCAGTG
ACCCCAGCTACCCTGGGCGGTGGGGCAGTGGGGCGGTGAGCCACCGATGAGTGCGTTCTG
GCCCAGGAGGAGGAGCCCCAGGCATTCTAGGGTGAGAGAGTTACACTCACCGCTGGGGTT
GCACCTCCCTGGTCGGGAGGGGAAAATGACATCAGCTGTGGGGAGAGAAAGACTCCGTCC
TTCACTGGCTCCCTGTTCCTAACATCCTCTAATAGGTACAGTCACACCCCTGAGCATCTG
TTCCCATGCCTTAGTACTGAGCTGGTCACCCCTATCCTTCCCCCTGCCTAGATGATAAAC
TTCCTAAAAGAAAATGAGTTATGCCTCCGGGGTATAGCAACCAGCTCTAGGTACAATCAG
GGCTCAGCCCCAGATGGCCGAGACTGATGGTGATGCAGCCCGAGTTGGCCCTTCCCACCC
AGCCGTCTCAGCGCTCCCCGTGTCACCCAGGGACCACAGTGTCTGGGATCCCAGGCACAC
AAGGAGAGGAGGGATAACAGGGCATCTTTTAGggagttcctgttgtggctcagcgggtta
tgaacccgactagtatctgtgaggacgtgggttctatccctggtgtctctcagtgggtta
aggatccggtgttgccatgagctatggtgt

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               38-152, + strand, RNAz p=0.925037

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-152, + strand, RNAz p=0.925037

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-257, gnl|bosTau2|chr8 (36009979-36010224)
               

               
               1-257, gnl|Hg17|chr8 (20197797-20197568)
               

               
               1-257, gnl|Mm7|chr8 (67632699-67632444)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-257, gnl|bosTau2|chr8 (36009979-36010224)
               

               
               1-257, gnl|Hg17|chr8 (20197797-20197568)
               

               
               1-257, gnl|Mm7|chr8 (67632699-67632444)

	1-257, gnl\|bosTau2\|chr8 (36009979-36010224)
	1-257, gnl\|Hg17\|chr8 (20197797-20197568)
	1-257, gnl\|Mm7\|chr8 (67632699-67632444)