Non-Coding RNA Search

Spl1-SPL010025E11

Sequence:


               
               CTGGCTTCAGTAAAACTTAAAAAAAAAAAAACACCAAATAGCTCAAGAGACACCTGTGGC
CGGCCCCCTCATCATGGGGTTATGTGGAACTAGTCCAGGGCAACAGGCTCACCTTCAGGA
GGGGGCGAGGAGTCAGCAGCAGAGGGCCGAGGCCCAAGGCCGGAGGGGGCTGAGCGGTAA
CATGCCAGGGTGGGGCAACTGGTCCAGGGACCTTCAGCCTCACCTCCTTTCATCCCTGGC
CAGGTGGTGTGGCGGTACCTGCTGAACGTGTATCCCGACGGGCTGACGGGCCGCGAGCGG
ATGGACTACATGAAACGCAAGAGCCGCGAGTATGAGCAGCTCAAGAGCGAGTGGGCCCAG
CGAGCGAGCCCCGAGGACCTGGAGTTCATCCGCAGCACCGTCCTCAAGGACGTGCTGCGT
ACCGACCGGGCCCACCCCTACTACGCGGGGCCCGAGGACGGCCCGCACCTGCGGGCTCTG
CACGACCTGCTCACCACCTACGCCGTCACGCACCCACAGGTATCCTACTGCCAGGGCATG
AGCGACCTGGCCTCGCCCATCCTGGCCGTCATGGACCACGAGGGCCACGCCTTCGTCTGC
TTTTGTGGCATCATGAAGCGCCTGGCCGCGAACTTCCACCCTGACGGCCGCGCCATGGCC
ACCAAGTTCGCGCACCTCAAGCTGCTGCTGCGCCACGCGGACCCCGACTTCTACCAGTAC
TTGCAGGAAGCCGGTGCCGACGACCTCTTCTTCTGCTACCGGTGGCTGCTGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCTTCAGTAAAACTTAAAAAAAAAAAAACACCAAATAGCTCAAGAGACACCTGTGGC
CGGCCCCCTCATCATGGGGTTATGTGGAACTAGTCCAGGGCAACAGGCTCACCTTCAGGA
GGGGGCGAGGAGTCAGCAGCAGAGGGCCGAGGCCCAAGGCCGGAGGGGGCTGAGCGGTAA
CATGCCAGGGTGGGGCAACTGGTCCAGGGACCTTCAGCCTCACCTCCTTTCATCCCTGGC
CAGGTGGTGTGGCGGTACCTGCTGAACGTGTATCCCGACGGGCTGACGGGCCGCGAGCGG
ATGGACTACATGAAACGCAAGAGCCGCGAGTATGAGCAGCTCAAGAGCGAGTGGGCCCAG
CGAGCGAGCCCCGAGGACCTGGAGTTCATCCGCAGCACCGTCCTCAAGGACGTGCTGCGT
ACCGACCGGGCCCACCCCTACTACGCGGGGCCCGAGGACGGCCCGCACCTGCGGGCTCTG
CACGACCTGCTCACCACCTACGCCGTCACGCACCCACAGGTATCCTACTGCCAGGGCATG
AGCGACCTGGCCTCGCCCATCCTGGCCGTCATGGACCACGAGGGCCACGCCTTCGTCTGC
TTTTGTGGCATCATGAAGCGCCTGGCCGCGAACTTCCACCCTGACGGCCGCGCCATGGCC
ACCAAGTTCGCGCACCTCAAGCTGCTGCTGCGCCACGCGGACCCCGACTTCTACCAGTAC
TTGCAGGAAGCCGGTGCCGACGACCTCTTCTTCTGCTACCGGTGGCTGCTGCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               297-496, - strand, RNAz p=0.994947

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               297-496, - strand, RNAz p=0.994947

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               372-472, + strand, RNAmicro p=0.991248

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               372-472, + strand, RNAmicro p=0.991248

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               37-773, gnl|bosTau2|chrX (25776918-25777644)
               

               
               37-773, gnl|Hg17|chrX (48174036-48174785)
               

               
               37-773, gnl|Mm7|chrX (6589418-6588687)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-773, gnl|bosTau2|chrX (25776918-25777644)
               

               
               37-773, gnl|Hg17|chrX (48174036-48174785)
               

               
               37-773, gnl|Mm7|chrX (6589418-6588687)

	37-773, gnl\|bosTau2\|chrX (25776918-25777644)
	37-773, gnl\|Hg17\|chrX (48174036-48174785)
	37-773, gnl\|Mm7\|chrX (6589418-6588687)