Non-Coding RNA Search

Spl1-SPL010026C07

Sequence:


               
               ACTCCGGAGGGAGGAAATCTCTCCCAACCTCTTTAGTCCTCCGACAAATTCATGAACAAC
GTTGCGCATCCAGAGGAGAGGCTGGGCTTGAAGAGTGACGTAGACTGTTAGCAGTTGAAA
GGGGGCATGTGGGCTGGAGGAGCTGCAGAGTGAATGAGGCTTTGAAGGGATCCAGATGAC
AGTGGTGGTGATGTCCTGGGCTCTTTCTAAGTGAGATCCTTACTCTAGGGACTCCCCTCC
ACTCTCCATTTTCTCAGTTGTCTTTTCTCCTTGTTATTACCCCCGGGGCATCACTTGAGT
GAAGGAAGCTCTCTGTTTTGGATCTCTCCCTGAGGGAGACAGGTCAGGGGTGGCCAGATC
TGCTGATCTCTGACCCTTGACCCTTTAGCTGGTGATGGAGTATTGCCTGGGCTCAGCTTC
TGACCTTCTAGAAGGTAAGTGATTCTTTGGCTTACAAGTGGGAGAGGGAGAAGAGCAGAG
AAACTGTAGGGGGAAGGGTTAAGGGAAGGTAGTTCCAGTCCCACCCTTGGGCTCCCTCAG
TGTAATGTTTTTCCCTTACTCTTCAGTGCACAAGAAGCCCCTTCAGGAGGTGGAGATTGC
AGCTGTGACCCACGGGGCTCTTCAGGGCCTGGCTTATCTGCACTCCCACAACATGATCCA
TAGGGATGTGAAGGCTGGAAACATCCTGCTGTCAGAGCCAGGCTTGGTGAAGCTGGGGGA
CTTCGGTTCTGCATCCATCATGGCACCTGCCAACTCCTTCGTGGGCACCCCATACTGGAT
GGCTCCAGAAGTGATCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCCGGAGGGAGGAAATCTCTCCCAACCTCTTTAGTCCTCCGACAAATTCATGAACAAC
GTTGCGCATCCAGAGGAGAGGCTGGGCTTGAAGAGTGACGTAGACTGTTAGCAGTTGAAA
GGGGGCATGTGGGCTGGAGGAGCTGCAGAGTGAATGAGGCTTTGAAGGGATCCAGATGAC
AGTGGTGGTGATGTCCTGGGCTCTTTCTAAGTGAGATCCTTACTCTAGGGACTCCCCTCC
ACTCTCCATTTTCTCAGTTGTCTTTTCTCCTTGTTATTACCCCCGGGGCATCACTTGAGT
GAAGGAAGCTCTCTGTTTTGGATCTCTCCCTGAGGGAGACAGGTCAGGGGTGGCCAGATC
TGCTGATCTCTGACCCTTGACCCTTTAGCTGGTGATGGAGTATTGCCTGGGCTCAGCTTC
TGACCTTCTAGAAGGTAAGTGATTCTTTGGCTTACAAGTGGGAGAGGGAGAAGAGCAGAG
AAACTGTAGGGGGAAGGGTTAAGGGAAGGTAGTTCCAGTCCCACCCTTGGGCTCCCTCAG
TGTAATGTTTTTCCCTTACTCTTCAGTGCACAAGAAGCCCCTTCAGGAGGTGGAGATTGC
AGCTGTGACCCACGGGGCTCTTCAGGGCCTGGCTTATCTGCACTCCCACAACATGATCCA
TAGGGATGTGAAGGCTGGAAACATCCTGCTGTCAGAGCCAGGCTTGGTGAAGCTGGGGGA
CTTCGGTTCTGCATCCATCATGGCACCTGCCAACTCCTTCGTGGGCACCCCATACTGGAT
GGCTCCAGAAGTGATCCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               439-555, + strand, RNAz p=0.638142

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               439-555, + strand, RNAz p=0.638142

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               469-585, + strand, RNAmicro p=0.988031

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               469-585, + strand, RNAmicro p=0.988031

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               214-664, gnl|bosTau2|chr25 (25329422-25329884)
               

               
               214-664, gnl|Hg17|chr16 (29897496-29897893)
               

               
               214-664, gnl|Mm7|chr7 (122976185-122975748)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               214-664, gnl|bosTau2|chr25 (25329422-25329884)
               

               
               214-664, gnl|Hg17|chr16 (29897496-29897893)
               

               
               214-664, gnl|Mm7|chr7 (122976185-122975748)

	214-664, gnl\|bosTau2\|chr25 (25329422-25329884)
	214-664, gnl\|Hg17\|chr16 (29897496-29897893)
	214-664, gnl\|Mm7\|chr7 (122976185-122975748)