Non-Coding RNA Search

Spl1-SPL010027F06

Sequence:


               
               AGTCGCGCCCAGCGCCGTCGCTGCCAGCGGGCGCCGGGCCGAGCCGCCCCAGCCCCTGCC
AGCCTCGCCGGGACCGACAGATAAGGAGCTCAGAGTCAGGCAAGGGCGGAATGACACTCG
TCGGTTCCAAAGCATCTTTCACCTACCAGGCAGAGGGCCCTTTGCTGTTGGTCTTTCTTG
GACCATTCCAGAGAGGTAGGTTGGGCAAAGGAAACAAGTAGGGAGGGGGAAGAAGAGATG
TTATTTTTTAGATAGGCTAGGAATTTGAATGGAATCCCTCCTCCATAACTATCTAGCCAA
AGGAGAACATATCTGTAGGACTGGAATGCTAAAAGGAAGACAGTGACCCACATTTGTTCT
GGGAGCTGATGGAGGGGGATGTGAACTAGATCCGGGCCAGCCTCCCAAGAGAAGGATGCT
GCTGCCTGGGAAGGATGGGAAAGAAGGGATGGCTTTGCTCCAAGGAGCCCTGGAGCCCAT
TATTAAGCTGCACCATTTGGTATTTGACTTGGTCCATTCATGGTAGAGTTGGGCTGGCCT
CTTTGGCGAGAGAAAAATTAAAATATTCTTCCAAAGGAAATGGATTGCAGTTTCATAACT
CGATATTGCTTCTCAAGGAGTCCTTAGGGACATTGTTTCTCTGGAGAGTTGGCAGTCACT
GTATCAGTGAGAGGCTGCTCCTTGGAACTTCTAGGACATTAGCTTGGATGATGAATGTAG
TCCTTGCATTGTGCAAATGAGGAAACTGAGGCCAGAGGCTGACGTTGGCAAAATATCCCC
CTTTGGTGTTTGGCAGTAACTGGGGATGGCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCGCGCCCAGCGCCGTCGCTGCCAGCGGGCGCCGGGCCGAGCCGCCCCAGCCCCTGCC
AGCCTCGCCGGGACCGACAGATAAGGAGCTCAGAGTCAGGCAAGGGCGGAATGACACTCG
TCGGTTCCAAAGCATCTTTCACCTACCAGGCAGAGGGCCCTTTGCTGTTGGTCTTTCTTG
GACCATTCCAGAGAGGTAGGTTGGGCAAAGGAAACAAGTAGGGAGGGGGAAGAAGAGATG
TTATTTTTTAGATAGGCTAGGAATTTGAATGGAATCCCTCCTCCATAACTATCTAGCCAA
AGGAGAACATATCTGTAGGACTGGAATGCTAAAAGGAAGACAGTGACCCACATTTGTTCT
GGGAGCTGATGGAGGGGGATGTGAACTAGATCCGGGCCAGCCTCCCAAGAGAAGGATGCT
GCTGCCTGGGAAGGATGGGAAAGAAGGGATGGCTTTGCTCCAAGGAGCCCTGGAGCCCAT
TATTAAGCTGCACCATTTGGTATTTGACTTGGTCCATTCATGGTAGAGTTGGGCTGGCCT
CTTTGGCGAGAGAAAAATTAAAATATTCTTCCAAAGGAAATGGATTGCAGTTTCATAACT
CGATATTGCTTCTCAAGGAGTCCTTAGGGACATTGTTTCTCTGGAGAGTTGGCAGTCACT
GTATCAGTGAGAGGCTGCTCCTTGGAACTTCTAGGACATTAGCTTGGATGATGAATGTAG
TCCTTGCATTGTGCAAATGAGGAAACTGAGGCCAGAGGCTGACGTTGGCAAAATATCCCC
CTTTGGTGTTTGGCAGTAACTGGGGATGGCGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               352-510, - strand, RNAz p=0.99906

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               352-510, - strand, RNAz p=0.99906

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               76-701, gnl|bosTau2|chr16 (30856054-30856672)
               

               
               76-701, gnl|Hg17|chr1 (9685786-9686415)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-701, gnl|bosTau2|chr16 (30856054-30856672)
               

               
               76-701, gnl|Hg17|chr1 (9685786-9686415)

	76-701, gnl\|bosTau2\|chr16 (30856054-30856672)
	76-701, gnl\|Hg17\|chr1 (9685786-9686415)