Non-Coding RNA Search

Spl1-SPL010036B12

Sequence:


               
               ATACCCGTTCTGCGCCGGCCTCAAAATGGCCGCCTTCTGGCGTATCTGGCGCTGTTGAAT
GGAGAAAGCTTTATTGTTCCCTTCGGGCAGGAGTGTTCGTGTCCTCTATGGCGCTGTCAA
TAAAGAACGGCAGTTTGAATCGGTGCTGAACAGAGAGGCAGTGGATTTTCAAGAACACAG
ACCTCAGAGCCAGACTGCCTGAGTTTGGACCCTAGGTCTGCCACACACCTGTTGCATGAC
CCAAGGATCTAGTACTGATCCCCACAAAGTTATTCTGGAAGAAGCGAGGGAGAGAGCTCT
TGGACAGAGCTGATGCAATGGAGCTCCCCAACTATAGCCGGCAGCTGCTGCAGCAGCTCT
ACACTCTGTGCAAGGAACAGCAGTTCTGTGACTGCACGATTTCCATCGGTACTATTTACT
TCAGGGCCCACAAGCTTGTCCTGGCCGCCGCCAGCCTTTTGTTCAAAACCCTGCTGGACA
ACACAGACACCATCTCCATCGATGCATCCGTGGTCAGCCCCGAAGAGTTTGCCCTCTTGT
TAGAAATGATGTACACTGGCAAACTACCTGTGGGCAAGCACAACTTCTCCAAAATCATCT
CTTTAGCCGACAGCCTACAGATGTTTGATGTGGCCGTTAGTTGTAAAAATCTTCTGACCA
GCCTCGTAAGCTGCTCTGTTCAGGGTCAGGTGGTGAGGGATGTCTCCAGCCCATCCTCAG
AGTCATCCAGGAAGGAGTCAGAGAACCCTGAAGTAGAAATCCTTTCCTCTGAGGGGGCTG
GAGAACTTCATTCCTCCAGGGAGGCTTCCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACCCGTTCTGCGCCGGCCTCAAAATGGCCGCCTTCTGGCGTATCTGGCGCTGTTGAAT
GGAGAAAGCTTTATTGTTCCCTTCGGGCAGGAGTGTTCGTGTCCTCTATGGCGCTGTCAA
TAAAGAACGGCAGTTTGAATCGGTGCTGAACAGAGAGGCAGTGGATTTTCAAGAACACAG
ACCTCAGAGCCAGACTGCCTGAGTTTGGACCCTAGGTCTGCCACACACCTGTTGCATGAC
CCAAGGATCTAGTACTGATCCCCACAAAGTTATTCTGGAAGAAGCGAGGGAGAGAGCTCT
TGGACAGAGCTGATGCAATGGAGCTCCCCAACTATAGCCGGCAGCTGCTGCAGCAGCTCT
ACACTCTGTGCAAGGAACAGCAGTTCTGTGACTGCACGATTTCCATCGGTACTATTTACT
TCAGGGCCCACAAGCTTGTCCTGGCCGCCGCCAGCCTTTTGTTCAAAACCCTGCTGGACA
ACACAGACACCATCTCCATCGATGCATCCGTGGTCAGCCCCGAAGAGTTTGCCCTCTTGT
TAGAAATGATGTACACTGGCAAACTACCTGTGGGCAAGCACAACTTCTCCAAAATCATCT
CTTTAGCCGACAGCCTACAGATGTTTGATGTGGCCGTTAGTTGTAAAAATCTTCTGACCA
GCCTCGTAAGCTGCTCTGTTCAGGGTCAGGTGGTGAGGGATGTCTCCAGCCCATCCTCAG
AGTCATCCAGGAAGGAGTCAGAGAACCCTGAAGTAGAAATCCTTTCCTCTGAGGGGGCTG
GAGAACTTCATTCCTCCAGGGAGGCTTCCAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61871076|ref|XP_595659.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61871076|ref|XP_595659.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               317-436, - strand, RNAz p=0.838333
               

               
               693-810, + strand, RNAz p=0.980775

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               317-436, - strand, RNAz p=0.838333
               

               
               693-810, + strand, RNAz p=0.980775

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-153, gnl|bosTau2|chr2 (84478172-84478020)
               

               
               1-153, gnl|Hg17|chr1 (22523651-22523803)
               

               
               1-153, gnl|Mm7|chr4 (136427237-136427083)
               


               
               244-810, gnl|bosTau2|chr2 (84437953-84437389)
               

               
               244-810, gnl|Hg17|chr1 (22561677-22562240)
               

               
               244-810, gnl|Mm7|chr4 (136397231-136396665)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-153, gnl|bosTau2|chr2 (84478172-84478020)
               

               
               1-153, gnl|Hg17|chr1 (22523651-22523803)
               

               
               1-153, gnl|Mm7|chr4 (136427237-136427083)
               


               
               244-810, gnl|bosTau2|chr2 (84437953-84437389)
               

               
               244-810, gnl|Hg17|chr1 (22561677-22562240)
               

               
               244-810, gnl|Mm7|chr4 (136397231-136396665)

	317-436, - strand, RNAz p=0.838333
	693-810, + strand, RNAz p=0.980775

	1-153, gnl\|bosTau2\|chr2 (84478172-84478020)
	1-153, gnl\|Hg17\|chr1 (22523651-22523803)
	1-153, gnl\|Mm7\|chr4 (136427237-136427083)

	244-810, gnl\|bosTau2\|chr2 (84437953-84437389)
	244-810, gnl\|Hg17\|chr1 (22561677-22562240)
	244-810, gnl\|Mm7\|chr4 (136397231-136396665)