Non-Coding RNA Search

Spl1-SPL010037D10

Sequence:


               
               ATTCACATGGGCTGCCACGGCTTCCGTGACCCCTTTGAGTGTAACATGTGTGGATATCGA
AGCCACGATCGCTATGAGTTCTCCTCGCACATAGCCAGAGGAGAACACAGAGCCATGATG
AAGTGAACATCTGGCCCGGAGACGCTTGGCACCTGCGCACTCAACATCATTTTTGAAGGC
CGATATATAATGTCCTCGCCGAACAACCTGCGCTCAAAACAAACTCAGTTCCAAACCCCT
TTCTACACCATTTTTAGTGTCCAAAGGATCACGTTCACGTGGGCAGCAGAGAAACGCTGT
CCCCATTTAGAAACTGTTTGCAGAGACATCGTGTTCCTAGTTTGGGGAACCCTTTATCTT
CCCCCCAGGAACTTGAATTTTATGATATTTAAAAGCCAGCGACGTATGTGGTCATCATCT
TTTGCAGCAGTAGAACAGGCATTCCTTGGAGCTTGTTGCCAACTGGAAGCATCCCCTGGT
TGTGCTGCATGAGACCCTTTTTCTGAGATACATCAACCACATGTGGAAAAGCATCAGCCA
CATGTGGAAAAGCCTCTTAGTCACATGCCCAGGGCCACAGAGAAGAAAAGCCCACCAGCT
GACTGACATTGCTGGGAAGCCTTGGCCTTCTGCACTTCACATAAGGCTGAAGGGTTAGGA
CATAACCCCCACCACCCCAGATCATAGTCCAAGGGTAAGGAAAAGAACAGCCAAAAATTG
CATTATGAATAACTGAAGCCCCTAGTCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCACATGGGCTGCCACGGCTTCCGTGACCCCTTTGAGTGTAACATGTGTGGATATCGA
AGCCACGATCGCTATGAGTTCTCCTCGCACATAGCCAGAGGAGAACACAGAGCCATGATG
AAGTGAACATCTGGCCCGGAGACGCTTGGCACCTGCGCACTCAACATCATTTTTGAAGGC
CGATATATAATGTCCTCGCCGAACAACCTGCGCTCAAAACAAACTCAGTTCCAAACCCCT
TTCTACACCATTTTTAGTGTCCAAAGGATCACGTTCACGTGGGCAGCAGAGAAACGCTGT
CCCCATTTAGAAACTGTTTGCAGAGACATCGTGTTCCTAGTTTGGGGAACCCTTTATCTT
CCCCCCAGGAACTTGAATTTTATGATATTTAAAAGCCAGCGACGTATGTGGTCATCATCT
TTTGCAGCAGTAGAACAGGCATTCCTTGGAGCTTGTTGCCAACTGGAAGCATCCCCTGGT
TGTGCTGCATGAGACCCTTTTTCTGAGATACATCAACCACATGTGGAAAAGCATCAGCCA
CATGTGGAAAAGCCTCTTAGTCACATGCCCAGGGCCACAGAGAAGAAAAGCCCACCAGCT
GACTGACATTGCTGGGAAGCCTTGGCCTTCTGCACTTCACATAAGGCTGAAGGGTTAGGA
CATAACCCCCACCACCCCAGATCATAGTCCAAGGGTAAGGAAAAGAACAGCCAAAAATTG
CATTATGAATAACTGAAGCCCCTAGTCTCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-120, + strand, RNAz p=0.899734

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, + strand, RNAz p=0.899734

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AY377982, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AY377982, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-536, gnl|bosTau2|chr19 (32399087-32398559)
               

               
               1-536, gnl|Hg17|chr17 (35175694-35175208)
               

               
               1-536, gnl|Mm7|chr11 (98576150-98575660)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-536, gnl|bosTau2|chr19 (32399087-32398559)
               

               
               1-536, gnl|Hg17|chr17 (35175694-35175208)
               

               
               1-536, gnl|Mm7|chr11 (98576150-98575660)

	1-536, gnl\|bosTau2\|chr19 (32399087-32398559)
	1-536, gnl\|Hg17\|chr17 (35175694-35175208)
	1-536, gnl\|Mm7\|chr11 (98576150-98575660)