Non-Coding RNA Search

Spl1-SPL010038F02

Sequence:


               
               ATGAATTTGCCAGTGATATTGCCCCCTTTCTCTGTCATCCCAATCTGTGGATACGCTATG
GCGCTGTGGGGTTCATCACAGTGGTAGCCCACCAAATAAGCATAGCTGATGTCTACTGCA
AACTGATGCCTTACCTTGACCCATACATTACTCAGCCAATAATACAGATTGAAAGAAAAC
TTGTTCTACTCAGTGTTTTAAAAGAGCCAGTAAGTCGTTCTATATTTGATTATGCTTTGA
GGTCTAAAGATATTACTAGCTTATTCAGACACCTTCACATGCGTCAGAAGAAACGGAGCG
GTTCTCTTCCCGACTGCCCTCCGCCTGAGGATCCTGCCATAGCACAGCTTCTGAAGAAAC
TGCTCTCACAGGGAAGACGGAAGAAGAGGAAGACAAACTTTTGGCACTAAAAGACTTCAT
GATGAAATCTCACAAAGCAAAGGCCAATATAGTGGACCAGAGTCACCTCCATGACAGTAG
TCAGAAAGGTGTAATTGACTTGGCAGCCTTGGGCATAACTGGGAGACAAGTTGATCTTGT
TAAAACCAGACAGGAACCAGATGACAAACGAGCTAGAAAACATGTAAAACAAGATTCAAA
TGTAAATGAAGAGTGGAAAAGCATGTTTGGATCGCTGGAACCGCCGAACATTCCACAAGG
CCTGCCTAAAGGGAGTGACCAGGAGGCGATTCAGGCTGGGAAGCCGCCGCGTTCCGAGTC
CTCTGCTGGCATATGTGCCCCTTTGTCAACGTCTCCTCAGGTTTCAGAAGTGACAAATGT
CCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGAATTTGCCAGTGATATTGCCCCCTTTCTCTGTCATCCCAATCTGTGGATACGCTATG
GCGCTGTGGGGTTCATCACAGTGGTAGCCCACCAAATAAGCATAGCTGATGTCTACTGCA
AACTGATGCCTTACCTTGACCCATACATTACTCAGCCAATAATACAGATTGAAAGAAAAC
TTGTTCTACTCAGTGTTTTAAAAGAGCCAGTAAGTCGTTCTATATTTGATTATGCTTTGA
GGTCTAAAGATATTACTAGCTTATTCAGACACCTTCACATGCGTCAGAAGAAACGGAGCG
GTTCTCTTCCCGACTGCCCTCCGCCTGAGGATCCTGCCATAGCACAGCTTCTGAAGAAAC
TGCTCTCACAGGGAAGACGGAAGAAGAGGAAGACAAACTTTTGGCACTAAAAGACTTCAT
GATGAAATCTCACAAAGCAAAGGCCAATATAGTGGACCAGAGTCACCTCCATGACAGTAG
TCAGAAAGGTGTAATTGACTTGGCAGCCTTGGGCATAACTGGGAGACAAGTTGATCTTGT
TAAAACCAGACAGGAACCAGATGACAAACGAGCTAGAAAACATGTAAAACAAGATTCAAA
TGTAAATGAAGAGTGGAAAAGCATGTTTGGATCGCTGGAACCGCCGAACATTCCACAAGG
CCTGCCTAAAGGGAGTGACCAGGAGGCGATTCAGGCTGGGAAGCCGCCGCGTTCCGAGTC
CTCTGCTGGCATATGTGCCCCTTTGTCAACGTCTCCTCAGGTTTCAGAAGTGACAAATGT
CCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61826407|ref|XP_600682.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61826407|ref|XP_600682.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               370-527, + strand, RNAz p=0.898769

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               370-527, + strand, RNAz p=0.898769

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-243, gnl|bosTau2|chr16 (6202300-6202060)
               

               
               3-243, gnl|Hg17|chr3 (131924974-131918066)
               

               
               3-243, gnl|Mm7|chr9 (105376066-105380609)
               


               
               370-572, gnl|bosTau2|chr1 (101996684-101996887)
               

               
               370-572, gnl|Hg17|chr3 (131910036-131909833)
               

               
               370-572, gnl|Mm7|chr9 (105385222-105385425)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-243, gnl|bosTau2|chr16 (6202300-6202060)
               

               
               3-243, gnl|Hg17|chr3 (131924974-131918066)
               

               
               3-243, gnl|Mm7|chr9 (105376066-105380609)
               


               
               370-572, gnl|bosTau2|chr1 (101996684-101996887)
               

               
               370-572, gnl|Hg17|chr3 (131910036-131909833)
               

               
               370-572, gnl|Mm7|chr9 (105385222-105385425)

	3-243, gnl\|bosTau2\|chr16 (6202300-6202060)
	3-243, gnl\|Hg17\|chr3 (131924974-131918066)
	3-243, gnl\|Mm7\|chr9 (105376066-105380609)

	370-572, gnl\|bosTau2\|chr1 (101996684-101996887)
	370-572, gnl\|Hg17\|chr3 (131910036-131909833)
	370-572, gnl\|Mm7\|chr9 (105385222-105385425)