Non-Coding RNA Search

Spl1-SPL010041D08

Sequence:


               
               CAGTCTTTTTCTTGTTTTCTTACAGAGTCTTAATATGAGGGGGGAAAAAAGTGTGACAGA
GACTGCTTACAGACACGTGGGCTATATTTACTTACAAATTGAAATACTGCAAGGGACAAT
TCAGAATGGCAGGTTTCCAGTGGAAATGGGACTTTATTACAAGCCAAATGGGATCCTACC
AGCTCTTCTCTTATCACTGGCCCAGTTAGAGTTTGCTGGACATGCTCTGTCCAGATCTGG
GAGAAAATCTAAAGCTTTGGCAGTCAGGCATCAAGAGCCTGCCAGATGTGTTTGTGCTTT
GTTGACCAACTGTTTAATTGGTAATAATTTTACATACTAACATTTCAATAGGAAGAAGTA
ATTTAGAAGCCAGTTGCTATGTCTGTGTTCCTAGTCAGAGTCGTATTGCATTCTCTAGGT
ATCAGCATGCTATAGAGTTAATTTGAAAGGCACTCAGTGAAGTGGTATACAGCCCCAATT
AAAAGTGGCACTGAATAGTTAGACATTTCTCATTTTTCTGTAAACTAGTACCTTTCTTAC
ACATTGCATGTAAACGACTTCTTGTTGTATTGCCTCTGTGAGCTCTCAGTCAGAACTCAT
TAAAAAAATTAGGAGCTTTTggagttcccatcgtgactcagcagaagcgaatctggctag
catccatgaggacgcaggttggatccctggcctcaatcagtgggttaaggatcttggcat
tgccgagagctgtggtgtagggtcgcagacacggcttggatcctgcatggcaatggctgt

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTCTTTTTCTTGTTTTCTTACAGAGTCTTAATATGAGGGGGGAAAAAAGTGTGACAGA
GACTGCTTACAGACACGTGGGCTATATTTACTTACAAATTGAAATACTGCAAGGGACAAT
TCAGAATGGCAGGTTTCCAGTGGAAATGGGACTTTATTACAAGCCAAATGGGATCCTACC
AGCTCTTCTCTTATCACTGGCCCAGTTAGAGTTTGCTGGACATGCTCTGTCCAGATCTGG
GAGAAAATCTAAAGCTTTGGCAGTCAGGCATCAAGAGCCTGCCAGATGTGTTTGTGCTTT
GTTGACCAACTGTTTAATTGGTAATAATTTTACATACTAACATTTCAATAGGAAGAAGTA
ATTTAGAAGCCAGTTGCTATGTCTGTGTTCCTAGTCAGAGTCGTATTGCATTCTCTAGGT
ATCAGCATGCTATAGAGTTAATTTGAAAGGCACTCAGTGAAGTGGTATACAGCCCCAATT
AAAAGTGGCACTGAATAGTTAGACATTTCTCATTTTTCTGTAAACTAGTACCTTTCTTAC
ACATTGCATGTAAACGACTTCTTGTTGTATTGCCTCTGTGAGCTCTCAGTCAGAACTCAT
TAAAAAAATTAGGAGCTTTTggagttcccatcgtgactcagcagaagcgaatctggctag
catccatgaggacgcaggttggatccctggcctcaatcagtgggttaaggatcttggcat
tgccgagagctgtggtgtagggtcgcagacacggcttggatcctgcatggcaatggctgt

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               205-443, + strand, RNAz p=0.812998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               205-443, + strand, RNAz p=0.812998

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               7-620, gnl|bosTau2|chr4 (4322741-4322125)
               

               
               7-620, gnl|Hg17|chr7 (91929818-91929242)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-620, gnl|bosTau2|chr4 (4322741-4322125)
               

               
               7-620, gnl|Hg17|chr7 (91929818-91929242)

	7-620, gnl\|bosTau2\|chr4 (4322741-4322125)
	7-620, gnl\|Hg17\|chr7 (91929818-91929242)