Non-Coding RNA Search

Spl1-SPL01A020032

Sequence:


               
               tttctgatgatggccattctgactggtatggggtggtacctccttgtagttcttacttgc
atttctctaataattagcaatgttgagcatcttttcatgttcctgtcggccgtctgtatg
tctgcttcagagaaatgtctgtttaggtcttcggcccattttttcgattgggttgtttgt
ttcattTTGTTTTGATATAAAGCTGTATGAGCTATTTGTATATTTTGGAAATGAATCCCT
TGTTGGTTGCATCTTTTGCAAATATTTTCTCAGGCATGGAGTTTCTTGAGTGTCTGTAAC
AAAAAAAAACCTACCCTGTCCTGGGATGGACTGGGAGGTGATGGGGGAGGGCTTCCACTT
GGCCAAGGGTTGACTGGGCCATGAGCATCATTGCGCAGAGAGATACACTCCGTACAGCAG
AGACAGTGTTGCAAATGCCCTGGGGTGAAAAGGGAGCTTGGTGTGCTTGTGGAACAGTTC
TGTTCCTCTTGATTGTCTGGTTTCTGACCCCGGCATTGCAGAGCCTTGCCTGGCCCTGGG
AATCCTGCGTTTCTGGGTCACATCCATGCTTTGCCTGGGCACTGTCCCCTAAATCCATTG
GTGTTTGAAGAATGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               tttctgatgatggccattctgactggtatggggtggtacctccttgtagttcttacttgc
atttctctaataattagcaatgttgagcatcttttcatgttcctgtcggccgtctgtatg
tctgcttcagagaaatgtctgtttaggtcttcggcccattttttcgattgggttgtttgt
ttcattTTGTTTTGATATAAAGCTGTATGAGCTATTTGTATATTTTGGAAATGAATCCCT
TGTTGGTTGCATCTTTTGCAAATATTTTCTCAGGCATGGAGTTTCTTGAGTGTCTGTAAC
AAAAAAAAACCTACCCTGTCCTGGGATGGACTGGGAGGTGATGGGGGAGGGCTTCCACTT
GGCCAAGGGTTGACTGGGCCATGAGCATCATTGCGCAGAGAGATACACTCCGTACAGCAG
AGACAGTGTTGCAAATGCCCTGGGGTGAAAAGGGAGCTTGGTGTGCTTGTGGAACAGTTC
TGTTCCTCTTGATTGTCTGGTTTCTGACCCCGGCATTGCAGAGCCTTGCCTGGCCCTGGG
AATCCTGCGTTTCTGGGTCACATCCATGCTTTGCCTGGGCACTGTCCCCTAAATCCATTG
GTGTTTGAAGAATGGCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.950048

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.950048

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-232, gnl|bosTau2|chr1 (26323307-26323535)
               

               
               1-232, gnl|hg17|chr3 (108212451-108212648)
               

               
               1-232, gnl|Hg17|chr3 (108212741-108212450)
               

               
               1-232, gnl|panTro1|chr2 (109732400-109732597)
               

               
               1-232, gnl|rheMac2|chr2 (27135508-27135705)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-232, gnl|bosTau2|chr1 (26323307-26323535)
               

               
               1-232, gnl|hg17|chr3 (108212451-108212648)
               

               
               1-232, gnl|Hg17|chr3 (108212741-108212450)
               

               
               1-232, gnl|panTro1|chr2 (109732400-109732597)
               

               
               1-232, gnl|rheMac2|chr2 (27135508-27135705)

	1-232, gnl\|bosTau2\|chr1 (26323307-26323535)
	1-232, gnl\|hg17\|chr3 (108212451-108212648)
	1-232, gnl\|Hg17\|chr3 (108212741-108212450)
	1-232, gnl\|panTro1\|chr2 (109732400-109732597)
	1-232, gnl\|rheMac2\|chr2 (27135508-27135705)