Non-Coding RNA Search

Spl1-SPL01A030081

Sequence:


               
               CTATTATGCCCTTATCTCAGTTGGGCAAACAGAGGCTCTGGGAGGGGAGGTCACAGGGCC
TAAAGCCTGGGTCTGCTGGGTTCTGCTTCCCCACTCCTCACCCTGGGACCTAAAAGGCTC
ACAGGCCACAAAGGATCTGTCACAGTAGGTCTGCCCAGACACCCGCCCCAGAGGAAGTCA
GAGGAGGAAGCAGCCAGGAGGGCCAGCAGGGATAGTCAGAGAGGGCTTCCTGGAAGAGGA
GACTAGAGTCAGGCCCTAAAAGATGAGTGTGGTTTGGACAAGGGGAGAAGCAGCTCGGGA
AAGGAGGCTCAGATAATCAGATAATCTGGGCAGTAATAAGCTAGGACTTAGCCAGACGTG
ACCTTGAGTCCTGACTCCACCTCCTACTGGCTTCATGGCCTTGGGCAAGTCTCTGGCCTC
AGTTTCCTCATTAGTAACACGCGGGACATTGAAGCTGGCTTACTCTCATAGGAGCAGGTT
GCGGGGGTTGGGGGGGGTAGCTGGAGAGAGCAGCCTGTGGCTCCACCGGGTGGTCCCCAG
TGGTCCCCACGTGCTCAGCTGGCCTGGATGGTTCCAGCTCAGACACAGAAACAGATTTTG
TGGGGCCCTAAAGCTTATAAAATGTTGAGGAGCCTCTTTAAAAAAATTATAACAAAAGTT
AGGGCTACATTTGATTGGGGTGGGGTTACATAAACTACACAAACTGTATTAGAACCACAC
ACATACCAGGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATTATGCCCTTATCTCAGTTGGGCAAACAGAGGCTCTGGGAGGGGAGGTCACAGGGCC
TAAAGCCTGGGTCTGCTGGGTTCTGCTTCCCCACTCCTCACCCTGGGACCTAAAAGGCTC
ACAGGCCACAAAGGATCTGTCACAGTAGGTCTGCCCAGACACCCGCCCCAGAGGAAGTCA
GAGGAGGAAGCAGCCAGGAGGGCCAGCAGGGATAGTCAGAGAGGGCTTCCTGGAAGAGGA
GACTAGAGTCAGGCCCTAAAAGATGAGTGTGGTTTGGACAAGGGGAGAAGCAGCTCGGGA
AAGGAGGCTCAGATAATCAGATAATCTGGGCAGTAATAAGCTAGGACTTAGCCAGACGTG
ACCTTGAGTCCTGACTCCACCTCCTACTGGCTTCATGGCCTTGGGCAAGTCTCTGGCCTC
AGTTTCCTCATTAGTAACACGCGGGACATTGAAGCTGGCTTACTCTCATAGGAGCAGGTT
GCGGGGGTTGGGGGGGGTAGCTGGAGAGAGCAGCCTGTGGCTCCACCGGGTGGTCCCCAG
TGGTCCCCACGTGCTCAGCTGGCCTGGATGGTTCCAGCTCAGACACAGAAACAGATTTTG
TGGGGCCCTAAAGCTTATAAAATGTTGAGGAGCCTCTTTAAAAAAATTATAACAAAAGTT
AGGGCTACATTTGATTGGGGTGGGGTTACATAAACTACACAAACTGTATTAGAACCACAC
ACATACCAGGAGT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               3-107, - strand, RNAz p=0.681832
               

               
               186-304, - strand, RNAz p=0.575535
               

               
               338-600, + strand, RNAz p=0.942681

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-107, - strand, RNAz p=0.681832
               

               
               186-304, - strand, RNAz p=0.575535
               

               
               338-600, + strand, RNAz p=0.942681

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               334-526, + strand, RNAmicro p=0.994166
               

               
               33-125, + strand, RNAmicro p=0.978195

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               334-526, + strand, RNAmicro p=0.994166
               

               
               33-125, + strand, RNAmicro p=0.978195

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-675, gnl|bosTau2|chr2 (84261868-84261182)
               

               
               3-675, gnl|Hg17|chr1 (22717525-22718213)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-675, gnl|bosTau2|chr2 (84261868-84261182)
               

               
               3-675, gnl|Hg17|chr1 (22717525-22718213)

	3-107, - strand, RNAz p=0.681832
	186-304, - strand, RNAz p=0.575535
	338-600, + strand, RNAz p=0.942681

	334-526, + strand, RNAmicro p=0.994166
	33-125, + strand, RNAmicro p=0.978195

	3-675, gnl\|bosTau2\|chr2 (84261868-84261182)
	3-675, gnl\|Hg17\|chr1 (22717525-22718213)