Spl1-SPL01A060044
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TTTCTGGTGGGAGGGAGCTTGTGATCTGGGAGTAGGGCTTACTGGGTTGGGGCGTTTCTG
TCCTGGAAAAGCCCAGGCTTTCCGTTGGCCAGGGAGGAAATATGCGTGTGTTCTTTTCTT
AGAATTAAAAAAAAAAAAAAAAAAAAAAAGGCAAACTAATCATCATTATAAAAGGAACCT
ATTTCTAGTAAGATAATTAGTGTCCTTACAAATAAACCTGGCAGAGCTGGGAACACATCT
TTAAGCTGTTTGCCATCTGGAAAAGCACCAGTCTTAACTCTTAACTAGACATTTGTACTT
CAGCATATTTTCCACAGAGTCATAAAACGCATGAGAACTTTGTCCTGTAAACAAGGTGAT
GGTTAGTCTGAGGAATCCAGTTAAGACATCATCTTCTGGTTTTGAGTCTTTACCTCCCAA
GACATGGAAATGCTTGTACCGTCCTCCAGTTTGGGCTTCTGCCTGTGACCTTCCGGCCTC
CTGTCCTCAGAATATCCAGGTCCTGGGCTGGAGAGGCTGTGTCCTTGGCTTCTGGCAAAT
CTCAGGCTCAGACAAAGGGCAGCATAACGGCAGTAATGCACGGCTAGCATTTTCTCTGTG
CGGGTGCTGGTCTGAGCAGCTCACACAGAGTGACTCCTCTGATCCCCACCACTCAGTGAG
GGAGGTATGGTCGTTTTTGCCTCTGTGACAGCTGCAGAAACTGAGGCACAGAGCCATTAA
GTCATTGCCACAGTTCCCAGTTACTAAGTGGCAAGTGAGTGGTCAGAGGAAAGGGGGG
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Blue-coloured subsequences are predicted RNA structures by RNAz
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TTTCTGGTGGGAGGGAGCTTGTGATCTGGGAGTAGGGCTTACTGGGTTGGGGCGTTTCTG
TCCTGGAAAAGCCCAGGCTTTCCGTTGGCCAGGGAGGAAATATGCGTGTGTTCTTTTCTT
AGAATTAAAAAAAAAAAAAAAAAAAAAAAGGCAAACTAATCATCATTATAAAAGGAACCT
ATTTCTAGTAAGATAATTAGTGTCCTTACAAATAAACCTGGCAGAGCTGGGAACACATCT
TTAAGCTGTTTGCCATCTGGAAAAGCACCAGTCTTAACTCTTAACTAGACATTTGTACTT
CAGCATATTTTCCACAGAGTCATAAAACGCATGAGAACTTTGTCCTGTAAACAAGGTGAT
GGTTAGTCTGAGGAATCCAGTTAAGACATCATCTTCTGGTTTTGAGTCTTTACCTCCCAA
GACATGGAAATGCTTGTACCGTCCTCCAGTTTGGGCTTCTGCCTGTGACCTTCCGGCCTC
CTGTCCTCAGAATATCCAGGTCCTGGGCTGGAGAGGCTGTGTCCTTGGCTTCTGGCAAAT
CTCAGGCTCAGACAAAGGGCAGCATAACGGCAGTAATGCACGGCTAGCATTTTCTCTGTG
CGGGTGCTGGTCTGAGCAGCTCACACAGAGTGACTCCTCTGATCCCCACCACTCAGTGAG
GGAGGTATGGTCGTTTTTGCCTCTGTGACAGCTGCAGAAACTGAGGCACAGAGCCATTAA
GTCATTGCCACAGTTCCCAGTTACTAAGTGGCAAGTGAGTGGTCAGAGGAAAGGGGGG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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21-126, CJ016938 full-length enriched swine cDNA library, adult spleen Sus
(dbj|CJ016938.1|), blast E-value=0, identity=100% |
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21-126, DB806205 full-length enriched swine cDNA library, adult alveolar
(dbj|DB806205.1|), blast E-value=0, identity=99.06% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
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21-126, CJ016938 full-length enriched swine cDNA library, adult spleen Sus
(dbj|CJ016938.1|), blast E-value=0, identity=100% |
|
21-126, DB806205 full-length enriched swine cDNA library, adult alveolar
(dbj|DB806205.1|), blast E-value=0, identity=99.06% |
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21-388, gnl|bosTau2|chr1 (24512899-24513250) |
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21-388, gnl|canFam2|chr23 (29475707-29475472) |
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21-388, gnl|dasNov1|scaffold_71628 (850-638) |
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21-388, gnl|hg17|chr3 (16383570-16383799) |
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21-388, gnl|Hg17|chr3 (16383917-16383569) |
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21-388, gnl|loxAfr1|scaffold_23290 (27004-27232) |
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21-388, gnl|monDom2|scaffold_7 (72012805-72013049) |
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21-388, gnl|oryCun1|scaffold_211494 (9822-9622) |
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21-388, gnl|panTro1|chr2 (17001882-17002111) |
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21-388, gnl|rheMac2|chr2 (158686824-158687053) |
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21-388, gnl|rn3|chr9 (6155404-6155241) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
21-388, gnl|bosTau2|chr1 (24512899-24513250) |
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21-388, gnl|canFam2|chr23 (29475707-29475472) |
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21-388, gnl|dasNov1|scaffold_71628 (850-638) |
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21-388, gnl|hg17|chr3 (16383570-16383799) |
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21-388, gnl|Hg17|chr3 (16383917-16383569) |
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21-388, gnl|loxAfr1|scaffold_23290 (27004-27232) |
|
21-388, gnl|monDom2|scaffold_7 (72012805-72013049) |
|
21-388, gnl|oryCun1|scaffold_211494 (9822-9622) |
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21-388, gnl|panTro1|chr2 (17001882-17002111) |
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21-388, gnl|rheMac2|chr2 (158686824-158687053) |
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21-388, gnl|rn3|chr9 (6155404-6155241) |
