Non-Coding RNA Search

Spl1-SPL01A070102

Sequence:


               
               TCTCCCTGGTGAGGTAGGGACAGCCTGGGCCAGTGCAGTCTAGGAGGCCATGGGACTTCT
CTGGTCCTGGACCCAGTTCTGAGGGCCCTGTCTTGAACTAGAGGGCGAGGGCTTGCTAGA
AGGATATAGGGAGATGGAAATCTCGTGAGAACTGTTTGAAGGACTGGAGACAACGTGGAG
GAGCAGATGAGCTGTTTCCTGATATGGAAAGGCTGTTTGTTGAGAGTGAGAAGTGCTTTG
TTACATGTATGTCCAGGCGGCAGACCCAGAAGTCATAGAAAAGTAGATCTGGGCTGAGTA
GAAAAGAAGGCTTGGTATAATGAGAGCCCTGAACAATGGGCCAGGCTGCTGACATTTTGA
GACAGTGAGTTCCCTGTCACGAGAAGAATTCAAGCAGGAGTTAGTCTAGAGCGAGCTCCT
GCGCTGGGCTGAAGCTTGGGCTGCATCATCTTCCCCATGCTCGCTTCCTGGGATCTCTGA
TTGGGGTCTAGCTCTGCCTTTCTTCCAAGTCCACTATGTTCCCACAGCAAATCTTTGTCG
TTTTCATCCTGGGACTCTGCCCCTGAGTGAGACAGAGGGACCCAGTCCGGCCTGTGCCCG
GGCATGGGGTGGGCTGTGTGACGGCTCTTGGCAGGAGCCCCAGGAAAGTCTGCCATGTGC
TGAGCTGGCCCAGTCACTGAGTATTTCTGTATCATGTTGCTGTGAATTCTTCCTGGTCAT
CTTACCCGCCCCCAGTCCTGTGGGTCAAGATTACTCTCCCTCANGCGGCCGATGAGGAAG
TAAAGAAATATCCAGGCCACTGCAAGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCCCTGGTGAGGTAGGGACAGCCTGGGCCAGTGCAGTCTAGGAGGCCATGGGACTTCT
CTGGTCCTGGACCCAGTTCTGAGGGCCCTGTCTTGAACTAGAGGGCGAGGGCTTGCTAGA
AGGATATAGGGAGATGGAAATCTCGTGAGAACTGTTTGAAGGACTGGAGACAACGTGGAG
GAGCAGATGAGCTGTTTCCTGATATGGAAAGGCTGTTTGTTGAGAGTGAGAAGTGCTTTG
TTACATGTATGTCCAGGCGGCAGACCCAGAAGTCATAGAAAAGTAGATCTGGGCTGAGTA
GAAAAGAAGGCTTGGTATAATGAGAGCCCTGAACAATGGGCCAGGCTGCTGACATTTTGA
GACAGTGAGTTCCCTGTCACGAGAAGAATTCAAGCAGGAGTTAGTCTAGAGCGAGCTCCT
GCGCTGGGCTGAAGCTTGGGCTGCATCATCTTCCCCATGCTCGCTTCCTGGGATCTCTGA
TTGGGGTCTAGCTCTGCCTTTCTTCCAAGTCCACTATGTTCCCACAGCAAATCTTTGTCG
TTTTCATCCTGGGACTCTGCCCCTGAGTGAGACAGAGGGACCCAGTCCGGCCTGTGCCCG
GGCATGGGGTGGGCTGTGTGACGGCTCTTGGCAGGAGCCCCAGGAAAGTCTGCCATGTGC
TGAGCTGGCCCAGTCACTGAGTATTTCTGTATCATGTTGCTGTGAATTCTTCCTGGTCAT
CTTACCCGCCCCCAGTCCTGTGGGTCAAGATTACTCTCCCTCANGCGGCCGATGAGGAAG
TAAAGAAATATCCAGGCCACTGCAAGGCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               37-142, + strand, RNAz p=0.516016

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-142, + strand, RNAz p=0.516016

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-612, gnl|bosTau2|chr8 (40060921-40060292)
               

               
               1-612, gnl|Hg17|chr8 (27276539-27277151)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chr8 (40060921-40060292)
               

               
               1-612, gnl|Hg17|chr8 (27276539-27277151)

	1-612, gnl\|bosTau2\|chr8 (40060921-40060292)
	1-612, gnl\|Hg17\|chr8 (27276539-27277151)