Non-Coding RNA Search

Spl1-SPL01A100099

Sequence:


               
               TATACTGGAGAAGTACCAGCCCCTGCCCCCCGAGCCGGCAGCCAGGCCAGCCTTCCCCCA
GAGACATACCTTTCCCGAAGTCCAGAGAGGGTCCAGACAGATAAGCTTAAAGAACTTAAG
TGAGGTCCTTGGAACAGAAAAAGTTCTTCACCAGATGAAGCCTGAATCATCTACCCTGTC
ACAAAACCAAAGCACTCAAGAGATGCCTTTTGCCACTGCCAGCTCTTCATTCATGATGCA
CAACCATGGCGTGCAAAACAGAGATCATAAAGAAAGCATGCAGTCTTGTCTTCCTCAGAG
ATGTCAGTCTCCAGCCAGCATGGGCCACCAGCGAAATTCGCTACATTGTAAAAACCGCAA
CTGGAGAAAACCTTCCTCTCCAAGGTCTGATGAAAAGGATGTCCCGCACAATGAATGGTA
CATTGGAGAATACAGTCGCCAGGCAGTAGAAGAGGCTTTACTGAAGGAGAACAAGGATGG
CACGTTCTTGGTCCGAGACTGTTCCACCAAGTCCCGGGCCGAGCCCTACGTGCTGGTGGT
GTTTCACGGGAACAAGGTCTACAATGTGAAGATCCGCTTCCTGGAGAGGAATCAGCAGTT
TGCCCTGGGGACCGGACTCCGAGGAGACGAGAAGTTTAATTCGGTGGAGGACATCATCGA
ACACTACAAGTATTTTCCTATCATACTCGTTGACGGGAAAGATAAAACCGGGATCCACAG
GGAACAGTGTTACCTGACTCAGCCCCTCCCTCTCGACAGACACTTTTCGCCTTGGTAGCC
TGGCCTTTGTCTCATCTTCAGGTCGGTGGATCCAATGCCTCAATCATTTTTTTCCTTTAT
TTCAGAAGATTGTTTTCTGTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATACTGGAGAAGTACCAGCCCCTGCCCCCCGAGCCGGCAGCCAGGCCAGCCTTCCCCCA
GAGACATACCTTTCCCGAAGTCCAGAGAGGGTCCAGACAGATAAGCTTAAAGAACTTAAG
TGAGGTCCTTGGAACAGAAAAAGTTCTTCACCAGATGAAGCCTGAATCATCTACCCTGTC
ACAAAACCAAAGCACTCAAGAGATGCCTTTTGCCACTGCCAGCTCTTCATTCATGATGCA
CAACCATGGCGTGCAAAACAGAGATCATAAAGAAAGCATGCAGTCTTGTCTTCCTCAGAG
ATGTCAGTCTCCAGCCAGCATGGGCCACCAGCGAAATTCGCTACATTGTAAAAACCGCAA
CTGGAGAAAACCTTCCTCTCCAAGGTCTGATGAAAAGGATGTCCCGCACAATGAATGGTA
CATTGGAGAATACAGTCGCCAGGCAGTAGAAGAGGCTTTACTGAAGGAGAACAAGGATGG
CACGTTCTTGGTCCGAGACTGTTCCACCAAGTCCCGGGCCGAGCCCTACGTGCTGGTGGT
GTTTCACGGGAACAAGGTCTACAATGTGAAGATCCGCTTCCTGGAGAGGAATCAGCAGTT
TGCCCTGGGGACCGGACTCCGAGGAGACGAGAAGTTTAATTCGGTGGAGGACATCATCGA
ACACTACAAGTATTTTCCTATCATACTCGTTGACGGGAAAGATAAAACCGGGATCCACAG
GGAACAGTGTTACCTGACTCAGCCCCTCCCTCTCGACAGACACTTTTCGCCTTGGTAGCC
TGGCCTTTGTCTCATCTTCAGGTCGGTGGATCCAATGCCTCAATCATTTTTTTCCTTTAT
TTCAGAAGATTGTTTTCTGTGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55666927|ref|XP_520687.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55666927|ref|XP_520687.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               702-814, + strand, RNAz p=0.667741

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               702-814, + strand, RNAz p=0.667741

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               145-863, gnl|bosTau2|chr16 (16920227-16919522)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-863, gnl|bosTau2|chr16 (16920227-16919522)