Non-Coding RNA Search

Spl1-SPL01A120049

Sequence:


               
               CATTTCGTTCTGCTACTGGCTTTTGAAAAAAGGGAGACCTGGGCTCCGAGACCGGCTCCC
TTCTGTCCTCCTGCTTTGGCGGGCTGGCCCGTCCCTCCATGGCTTTCGGCGACCCACCAG
TCACCACCACGTCACCCACAGGCTTCTTCCTTTTTGAAAAATCCTTCCAACCCGGCCCAC
CCACAGCCCCGTAGCCTTTCGCCCTAGGCTGACTCACTCTCTCCCAGATCCTTCCTCTCC
CACCCACCCTAGACCCATCCCTCGGTGTGGAGAAGCGACACCGTCATGCTCTCCTCCATG
GGCAGAAATGGGGTGGGGAGGAGGGGGTCATTCCGGGGTCCAGAGACCCATCCAGGTGGC
TCAGATGGGGCTCGGATGGGCCACTGAGCACGAGGAGATGGACTGGCCATCTGGAGGGTT
GGGAGCTCAAGTTTGTGTGTTTGGGGCGGTTTGGGGCCTTTTTTTGGTGAGGGCGGTGGT
CTGTGTGCGGCGCCGAGTTAGCCGGCGAATAGCAGTCAATGGCAGGCGCTCTCGGGAGAG
GAAGAAAGAGGCGGCTGTCTCCGTGTGTGGGTGTGTGGATGTGCTGTAATTGCCGGCAAT
CCCCACTTTTCTGGGTGTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTCGTTCTGCTACTGGCTTTTGAAAAAAGGGAGACCTGGGCTCCGAGACCGGCTCCC
TTCTGTCCTCCTGCTTTGGCGGGCTGGCCCGTCCCTCCATGGCTTTCGGCGACCCACCAG
TCACCACCACGTCACCCACAGGCTTCTTCCTTTTTGAAAAATCCTTCCAACCCGGCCCAC
CCACAGCCCCGTAGCCTTTCGCCCTAGGCTGACTCACTCTCTCCCAGATCCTTCCTCTCC
CACCCACCCTAGACCCATCCCTCGGTGTGGAGAAGCGACACCGTCATGCTCTCCTCCATG
GGCAGAAATGGGGTGGGGAGGAGGGGGTCATTCCGGGGTCCAGAGACCCATCCAGGTGGC
TCAGATGGGGCTCGGATGGGCCACTGAGCACGAGGAGATGGACTGGCCATCTGGAGGGTT
GGGAGCTCAAGTTTGTGTGTTTGGGGCGGTTTGGGGCCTTTTTTTGGTGAGGGCGGTGGT
CTGTGTGCGGCGCCGAGTTAGCCGGCGAATAGCAGTCAATGGCAGGCGCTCTCGGGAGAG
GAAGAAAGAGGCGGCTGTCTCCGTGTGTGGGTGTGTGGATGTGCTGTAATTGCCGGCAAT
CCCCACTTTTCTGGGTGTGAT

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               1-191, - strand, RNAz p=0.996296
               

               
               21-197, - strand, RNAz p=0.959676
               

               
               307-415, - strand, RNAz p=0.584425
               

               
               333-444, - strand, RNAz p=0.951234

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-191, - strand, RNAz p=0.996296
               

               
               21-197, - strand, RNAz p=0.959676
               

               
               307-415, - strand, RNAz p=0.584425
               

               
               333-444, - strand, RNAz p=0.951234

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-621, gnl|bosTau2|chr19 (30780960-30780342)
               

               
               1-621, gnl|canFam2|chr9 (27406907-27407317)
               

               
               1-621, gnl|echTel1|scaffold_303011 (9655-10075)
               

               
               1-621, gnl|hg17|chr17 (43169070-43169490)
               

               
               1-621, gnl|Hg17|chr17 (43169087-43169722)
               

               
               1-621, gnl|loxAfr1|scaffold_219973 (1121-702)
               

               
               1-621, gnl|mm7|chr11 (97219174-97218802)
               

               
               1-621, gnl|Mm7|chr11 (97219156-97218236)
               

               
               1-621, gnl|oryCun1|scaffold_158825 (4346-3942)
               

               
               1-621, gnl|panTro1|chr19_random (42040813-42041233)
               

               
               1-621, gnl|rheMac2|chr16 (31945746-31946159)
               

               
               1-621, gnl|rn3|chr10 (85843437-85843075)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-621, gnl|bosTau2|chr19 (30780960-30780342)
               

               
               1-621, gnl|canFam2|chr9 (27406907-27407317)
               

               
               1-621, gnl|echTel1|scaffold_303011 (9655-10075)
               

               
               1-621, gnl|hg17|chr17 (43169070-43169490)
               

               
               1-621, gnl|Hg17|chr17 (43169087-43169722)
               

               
               1-621, gnl|loxAfr1|scaffold_219973 (1121-702)
               

               
               1-621, gnl|mm7|chr11 (97219174-97218802)
               

               
               1-621, gnl|Mm7|chr11 (97219156-97218236)
               

               
               1-621, gnl|oryCun1|scaffold_158825 (4346-3942)
               

               
               1-621, gnl|panTro1|chr19_random (42040813-42041233)
               

               
               1-621, gnl|rheMac2|chr16 (31945746-31946159)
               

               
               1-621, gnl|rn3|chr10 (85843437-85843075)

	1-191, - strand, RNAz p=0.996296
	21-197, - strand, RNAz p=0.959676
	307-415, - strand, RNAz p=0.584425
	333-444, - strand, RNAz p=0.951234

	1-621, gnl\|bosTau2\|chr19 (30780960-30780342)
	1-621, gnl\|canFam2\|chr9 (27406907-27407317)
	1-621, gnl\|echTel1\|scaffold_303011 (9655-10075)
	1-621, gnl\|hg17\|chr17 (43169070-43169490)
	1-621, gnl\|Hg17\|chr17 (43169087-43169722)
	1-621, gnl\|loxAfr1\|scaffold_219973 (1121-702)
	1-621, gnl\|mm7\|chr11 (97219174-97218802)
	1-621, gnl\|Mm7\|chr11 (97219156-97218236)
	1-621, gnl\|oryCun1\|scaffold_158825 (4346-3942)
	1-621, gnl\|panTro1\|chr19_random (42040813-42041233)
	1-621, gnl\|rheMac2\|chr16 (31945746-31946159)
	1-621, gnl\|rn3\|chr10 (85843437-85843075)