Non-Coding RNA Search

Spl1-SPL01B010076

Sequence:


               
               CAAtgggttaaggatccagcgctgccatgagctgtggtgtaggtcacaggcgaggcttgg
atgctgtgttgctgtggctgtggctgtggctgtggctggcagctgcacttccaattcgac
ccctacctgggcacttccatatgctgcagatgcggccctAAAAAGAAAAAAAGAAAAAAA
TCAAATTCTTACATCTCCCCTCCCTGTGAAAATTCTTGCCTTGATCATGAGAAAGCTCCT
CCCAAAGCAAGGCCCAGTCAGATCACAGTGTGAAGCTGAATTCTTTTGCAGCAGCTTCTT
ACCAGACAGGCCCCTAACCTGGATGGAATGTATTGCAAAAGCCTTTGTATAATGAGGGCA
AAATAGAAACCTCCGGTTTGGAAGCTCTTTTTTTCTTCTTGAGGGGTCTGGAGTATTTTT
GTTCGAGTTTAGCGTTCCAAGGGAGGAGGGTTTTGGTGAAAATGGAAGAGAAACCCTGCC
AAACAGAAATTCCATATCCGACGGAGATTTTCCTCCTTTCGAGAAGGTGTGGGAGCAGCC
AAGGAGCAGAAAAGCATGGGGGAGTTGGGGTGATGGCTCGGAATGCTCTGGATGGAGAGC
TTGCCAGCCCGCTGAGGGGCCAGGGGGGTGAAGGCACAGCTGCCTGGGGGACACGTCTCA
ACTCCTCAGACCCCTCGAGGTCGGGTATGGTCAAGAAAGAAGCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAtgggttaaggatccagcgctgccatgagctgtggtgtaggtcacaggcgaggcttgg
atgctgtgttgctgtggctgtggctgtggctgtggctggcagctgcacttccaattcgac
ccctacctgggcacttccatatgctgcagatgcggccctAAAAAGAAAAAAAGAAAAAAA
TCAAATTCTTACATCTCCCCTCCCTGTGAAAATTCTTGCCTTGATCATGAGAAAGCTCCT
CCCAAAGCAAGGCCCAGTCAGATCACAGTGTGAAGCTGAATTCTTTTGCAGCAGCTTCTT
ACCAGACAGGCCCCTAACCTGGATGGAATGTATTGCAAAAGCCTTTGTATAATGAGGGCA
AAATAGAAACCTCCGGTTTGGAAGCTCTTTTTTTCTTCTTGAGGGGTCTGGAGTATTTTT
GTTCGAGTTTAGCGTTCCAAGGGAGGAGGGTTTTGGTGAAAATGGAAGAGAAACCCTGCC
AAACAGAAATTCCATATCCGACGGAGATTTTCCTCCTTTCGAGAAGGTGTGGGAGCAGCC
AAGGAGCAGAAAAGCATGGGGGAGTTGGGGTGATGGCTCGGAATGCTCTGGATGGAGAGC
TTGCCAGCCCGCTGAGGGGCCAGGGGGGTGAAGGCACAGCTGCCTGGGGGACACGTCTCA
ACTCCTCAGACCCCTCGAGGTCGGGTATGGTCAAGAAAGAAGCTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               482-597, + strand, RNAz p=0.946256

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               482-597, + strand, RNAz p=0.946256

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               272-597, gnl|bosTau2|chr13 (12028945-12028628)
               

               
               272-597, gnl|canFam2|chr2 (11956679-11956419)
               

               
               272-597, gnl|hg17|chr10 (24686393-24686683)
               

               
               272-597, gnl|Hg17|chr10 (24686445-24686796)
               

               
               272-597, gnl|loxAfr1|scaffold_326 (148717-148450)
               

               
               272-597, gnl|mm7|chr2 (20704997-20705249)
               

               
               272-597, gnl|Mm7|chr2 (20705042-20705338)
               

               
               272-597, gnl|monDom2|scaffold_7 (44274842-44274586)
               

               
               272-597, gnl|panTro1|chr8 (24938161-24938450)
               

               
               272-597, gnl|rheMac2|chr9 (24548596-24548882)
               

               
               272-597, gnl|rn3|chr17 (94635115-94635368)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               272-597, gnl|bosTau2|chr13 (12028945-12028628)
               

               
               272-597, gnl|canFam2|chr2 (11956679-11956419)
               

               
               272-597, gnl|hg17|chr10 (24686393-24686683)
               

               
               272-597, gnl|Hg17|chr10 (24686445-24686796)
               

               
               272-597, gnl|loxAfr1|scaffold_326 (148717-148450)
               

               
               272-597, gnl|mm7|chr2 (20704997-20705249)
               

               
               272-597, gnl|Mm7|chr2 (20705042-20705338)
               

               
               272-597, gnl|monDom2|scaffold_7 (44274842-44274586)
               

               
               272-597, gnl|panTro1|chr8 (24938161-24938450)
               

               
               272-597, gnl|rheMac2|chr9 (24548596-24548882)
               

               
               272-597, gnl|rn3|chr17 (94635115-94635368)

	272-597, gnl\|bosTau2\|chr13 (12028945-12028628)
	272-597, gnl\|canFam2\|chr2 (11956679-11956419)
	272-597, gnl\|hg17\|chr10 (24686393-24686683)
	272-597, gnl\|Hg17\|chr10 (24686445-24686796)
	272-597, gnl\|loxAfr1\|scaffold_326 (148717-148450)
	272-597, gnl\|mm7\|chr2 (20704997-20705249)
	272-597, gnl\|Mm7\|chr2 (20705042-20705338)
	272-597, gnl\|monDom2\|scaffold_7 (44274842-44274586)
	272-597, gnl\|panTro1\|chr8 (24938161-24938450)
	272-597, gnl\|rheMac2\|chr9 (24548596-24548882)
	272-597, gnl\|rn3\|chr17 (94635115-94635368)