Non-Coding RNA Search

Spl1-SPL01B050042

Sequence:


               
               ATTCTGGAAATCAGACGATCATATGTTGCCTGACTAGAGAATGAAAGGAGGGAGGGACCT
CCCCTTCTGGAGAGTCCCCCAGAGCTGCTCTGCTGCCCCTCACCCCAAAGACTGGCCATG
TCCCCTGTCCCCAGGGGATGGCAGTGGGACAGACGCTGGGAGAGCTCTGCGGGCCGCCTC
CTGACACAGCCTGCGTTCGCTTTCCCGGAGGGTCACAGCGTCTGCTCTAGAGAAAAACAT
TTTCATATTTCAAGTGTTTATCTCTTCAGCATTTGAGTGCTCAGAGAGATTAATATCTGA
AGATCACCACGGCCTCGGGCAACAGGAGAGAACACTTACCCTCGTCCCAGCCTTAATCAC
CCTCCCCCCCTCTCGTTCACTGCAATAATGTTTAATTAATATAATGAGACTCCTGCACGT
TGGAAAAAAAAAATACTTATTTATATAACCCAGCCTGGATTTTTTCATTTCATTTCCTCT
CCTTTGAGACTTGGCCCAATTAATTGCTTGTTTTTCCCAACCCCCACTTTTGATCTGAAC
ATAAAGAAGGTTTGTGGGGTATGTGCGTGTGTGTGTTTGCATAGCATTTATATGTATGTG
TTTGTGAGTTGTGTGTATGTGTTTGTGTTTGTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCTGGAAATCAGACGATCATATGTTGCCTGACTAGAGAATGAAAGGAGGGAGGGACCT
CCCCTTCTGGAGAGTCCCCCAGAGCTGCTCTGCTGCCCCTCACCCCAAAGACTGGCCATG
TCCCCTGTCCCCAGGGGATGGCAGTGGGACAGACGCTGGGAGAGCTCTGCGGGCCGCCTC
CTGACACAGCCTGCGTTCGCTTTCCCGGAGGGTCACAGCGTCTGCTCTAGAGAAAAACAT
TTTCATATTTCAAGTGTTTATCTCTTCAGCATTTGAGTGCTCAGAGAGATTAATATCTGA
AGATCACCACGGCCTCGGGCAACAGGAGAGAACACTTACCCTCGTCCCAGCCTTAATCAC
CCTCCCCCCCTCTCGTTCACTGCAATAATGTTTAATTAATATAATGAGACTCCTGCACGT
TGGAAAAAAAAAATACTTATTTATATAACCCAGCCTGGATTTTTTCATTTCATTTCCTCT
CCTTTGAGACTTGGCCCAATTAATTGCTTGTTTTTCCCAACCCCCACTTTTGATCTGAAC
ATAAAGAAGGTTTGTGGGGTATGTGCGTGTGTGTGTTTGCATAGCATTTATATGTATGTG
TTTGTGAGTTGTGTGTATGTGTTTGTGTTTGTGTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               176-331, - strand, RNAz p=0.897257
               

               
               411-530, - strand, RNAz p=0.986216

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               176-331, - strand, RNAz p=0.897257
               

               
               411-530, - strand, RNAz p=0.986216

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               444-579, - strand, RNAmicro p=0.997531
               

               
               241-330, + strand, RNAmicro p=0.982419

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               444-579, - strand, RNAmicro p=0.997531
               

               
               241-330, + strand, RNAmicro p=0.982419

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-635, gnl|bosTau2|chr2 (54544812-54544191)
               

               
               1-635, gnl|Hg17|chr2 (206444407-206444982)
               

               
               1-635, gnl|Mm7|chr1 (63013741-63014342)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-635, gnl|bosTau2|chr2 (54544812-54544191)
               

               
               1-635, gnl|Hg17|chr2 (206444407-206444982)
               

               
               1-635, gnl|Mm7|chr1 (63013741-63014342)

	176-331, - strand, RNAz p=0.897257
	411-530, - strand, RNAz p=0.986216

	444-579, - strand, RNAmicro p=0.997531
	241-330, + strand, RNAmicro p=0.982419

	1-635, gnl\|bosTau2\|chr2 (54544812-54544191)
	1-635, gnl\|Hg17\|chr2 (206444407-206444982)
	1-635, gnl\|Mm7\|chr1 (63013741-63014342)