Non-Coding RNA Search

Spl1-SPL01B060084

Sequence:


               
               ATTCTTTCCCTCCTGCAGGAGCCAGGGCAGGGCACATTCTGCAGGTCCTGCTCCCCAGGC
ACCTTCTCAGCCTCCTGGGGCTCTAGCCCGTGCCAGCCCCACGCCCGCTGCAGCCCTCGA
GGGAGGTTGGAGGCCCAGGCGGGCACGGCCACTCGAGACACACTATGTGGAAACTGCCAG
CCTGGGTGGTTTGCCCCTTCCCAGGTCCCGGGTGTTCCCTGTCAGCCGTGCTCCTGGACG
CCTCTGGGTCCTCGGGGCTGTTATGAGCGTGGGCAGCGCACCCGACGTGGCGTGGAGGTG
GCAGCAGGGGCCAGCGGCGCAGGGGAGACGCGGCAGCCCGGGAACGGCACTCGGGCCTCG
CAGCCCGGCCCCTGCTGCTCCCGCTGTAGTCAGAAGAAGTGGCCTGAGGTGCTGCTGTCC
CCGGAGGCCGCAGCTGCCACTACTCCTGCTCCCAGGCTCCTGCCCAACCCAACCAGGGCG
GCCAAGGCAGGTCGCCAGGGCGAGGTCACCATCTTGTCTGTGGGCAGGTTCCGAGTGGCT
CGAATTCCTGAGCAGCGGACGAGTTCTGGGGCCTCGGAGGTGAGGACTGTCACAGAGGGC
GCGCCCTCAGGGGCCGAGCTCCCCGACTCCCCCCAGCCTGGCCTCCCCAGTGAGCAGCGG
GCACTGCTGGCGGGTGGTGGAAGCCACGCCAGGTGGCTGCAGCCGCCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCTTTCCCTCCTGCAGGAGCCAGGGCAGGGCACATTCTGCAGGTCCTGCTCCCCAGGC
ACCTTCTCAGCCTCCTGGGGCTCTAGCCCGTGCCAGCCCCACGCCCGCTGCAGCCCTCGA
GGGAGGTTGGAGGCCCAGGCGGGCACGGCCACTCGAGACACACTATGTGGAAACTGCCAG
CCTGGGTGGTTTGCCCCTTCCCAGGTCCCGGGTGTTCCCTGTCAGCCGTGCTCCTGGACG
CCTCTGGGTCCTCGGGGCTGTTATGAGCGTGGGCAGCGCACCCGACGTGGCGTGGAGGTG
GCAGCAGGGGCCAGCGGCGCAGGGGAGACGCGGCAGCCCGGGAACGGCACTCGGGCCTCG
CAGCCCGGCCCCTGCTGCTCCCGCTGTAGTCAGAAGAAGTGGCCTGAGGTGCTGCTGTCC
CCGGAGGCCGCAGCTGCCACTACTCCTGCTCCCAGGCTCCTGCCCAACCCAACCAGGGCG
GCCAAGGCAGGTCGCCAGGGCGAGGTCACCATCTTGTCTGTGGGCAGGTTCCGAGTGGCT
CGAATTCCTGAGCAGCGGACGAGTTCTGGGGCCTCGGAGGTGAGGACTGTCACAGAGGGC
GCGCCCTCAGGGGCCGAGCTCCCCGACTCCCCCCAGCCTGGCCTCCCCAGTGAGCAGCGG
GCACTGCTGGCGGGTGGTGGAAGCCACGCCAGGTGGCTGCAGCCGCCAGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               3-188, - strand, RNAz p=0.859874
               

               
               423-529, - strand, RNAz p=0.753718

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-188, - strand, RNAz p=0.859874
               

               
               423-529, - strand, RNAz p=0.753718

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               45-149, + strand, RNAmicro p=0.99584
               

               
               3-148, - strand, RNAmicro p=0.911646

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               45-149, + strand, RNAmicro p=0.99584
               

               
               3-148, - strand, RNAmicro p=0.911646

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               3-188, gnl|bosTau2|chr15 (41739019-41739204)
               

               
               3-188, gnl|Hg17|chr11 (72779432-72779617)
               

               
               3-188, gnl|Mm7|chr7 (96897781-96897597)
               


               
               354-529, gnl|bosTau2|chr15 (41742144-41742331)
               

               
               354-529, gnl|canFam2|chr21 (27841175-27841004)
               

               
               354-529, gnl|danRer3|chr18 (1390171-1390315)
               

               
               354-529, gnl|echTel1|scaffold_239353 (6687-6858)
               

               
               354-529, gnl|fr1|chrUn (259474527-259474261)
               

               
               354-529, gnl|galGal2|chr1 (187433509-187433364)
               

               
               354-529, gnl|hg17|chr11 (72783194-72783365)
               

               
               354-529, gnl|Hg17|chr11 (72783242-72783429)
               

               
               354-529, gnl|mm7|chr7 (96894497-96894329)
               

               
               354-529, gnl|Mm7|chr7 (96894447-96894263)
               

               
               354-529, gnl|monDom2|scaffold_74 (4145329-4145161)
               

               
               354-529, gnl|panTro1|chr9 (74062664-74062835)
               

               
               354-529, gnl|rheMac2|chr14 (71511859-71512030)
               

               
               354-529, gnl|rn3|chr1 (158374824-158374656)
               

               
               354-529, gnl|tetNig1|chr10 (9522977-9523168)
               

               
               354-529, gnl|xenTro1|scaffold_1545 (68387-68234)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-188, gnl|bosTau2|chr15 (41739019-41739204)
               

               
               3-188, gnl|Hg17|chr11 (72779432-72779617)
               

               
               3-188, gnl|Mm7|chr7 (96897781-96897597)
               


               
               354-529, gnl|bosTau2|chr15 (41742144-41742331)
               

               
               354-529, gnl|canFam2|chr21 (27841175-27841004)
               

               
               354-529, gnl|danRer3|chr18 (1390171-1390315)
               

               
               354-529, gnl|echTel1|scaffold_239353 (6687-6858)
               

               
               354-529, gnl|fr1|chrUn (259474527-259474261)
               

               
               354-529, gnl|galGal2|chr1 (187433509-187433364)
               

               
               354-529, gnl|hg17|chr11 (72783194-72783365)
               

               
               354-529, gnl|Hg17|chr11 (72783242-72783429)
               

               
               354-529, gnl|mm7|chr7 (96894497-96894329)
               

               
               354-529, gnl|Mm7|chr7 (96894447-96894263)
               

               
               354-529, gnl|monDom2|scaffold_74 (4145329-4145161)
               

               
               354-529, gnl|panTro1|chr9 (74062664-74062835)
               

               
               354-529, gnl|rheMac2|chr14 (71511859-71512030)
               

               
               354-529, gnl|rn3|chr1 (158374824-158374656)
               

               
               354-529, gnl|tetNig1|chr10 (9522977-9523168)
               

               
               354-529, gnl|xenTro1|scaffold_1545 (68387-68234)

	3-188, - strand, RNAz p=0.859874
	423-529, - strand, RNAz p=0.753718

	45-149, + strand, RNAmicro p=0.99584
	3-148, - strand, RNAmicro p=0.911646

	3-188, gnl\|bosTau2\|chr15 (41739019-41739204)
	3-188, gnl\|Hg17\|chr11 (72779432-72779617)
	3-188, gnl\|Mm7\|chr7 (96897781-96897597)

	354-529, gnl\|bosTau2\|chr15 (41742144-41742331)
	354-529, gnl\|canFam2\|chr21 (27841175-27841004)
	354-529, gnl\|danRer3\|chr18 (1390171-1390315)
	354-529, gnl\|echTel1\|scaffold_239353 (6687-6858)
	354-529, gnl\|fr1\|chrUn (259474527-259474261)
	354-529, gnl\|galGal2\|chr1 (187433509-187433364)
	354-529, gnl\|hg17\|chr11 (72783194-72783365)
	354-529, gnl\|Hg17\|chr11 (72783242-72783429)
	354-529, gnl\|mm7\|chr7 (96894497-96894329)
	354-529, gnl\|Mm7\|chr7 (96894447-96894263)
	354-529, gnl\|monDom2\|scaffold_74 (4145329-4145161)
	354-529, gnl\|panTro1\|chr9 (74062664-74062835)
	354-529, gnl\|rheMac2\|chr14 (71511859-71512030)
	354-529, gnl\|rn3\|chr1 (158374824-158374656)
	354-529, gnl\|tetNig1\|chr10 (9522977-9523168)
	354-529, gnl\|xenTro1\|scaffold_1545 (68387-68234)