Spl1-SPL01B120034
|
GGCATTTTGTGGTGTGGAGATGACTTCCTTACCTACTGGTCCAGTTGCTGTCCTTGTGGT
TCCTGTGAACGACTCTGTGTCAGGAATGCAGGTGTCCCTCAAGCACAAGGATGCTCAAAG
GCCTGGTGGTGTGTCCCCAGGATGCAGGGAAGCAGACCTTGTCTCTGGCGGGGAGGCTCC
TGGCAGTGTCAGAACCTGGTCGGGCGCAGGGCCCGGCCGACAACTAGCCAAACGCCCCCA
GCTGTCAGCGCAGAGCAGGGCCTGGCAGGGCGTGGGCGACAAGCTGGCCAAGCTCAGCCC
CAGGGTCTGCTTGACTCCCAAACCCGTTGTCTTTGAGGCTGTGATTTATCCGAATAAGGA
GAGGCAGTGGTTTTGCTGACCATCTCAGATTTCCGAGCCATATCCACTGGCTGGCTGGCT
GGCTTGATATTTGAACTGAAAACACAGAGGTATTCCTTTGAAATGGAGCACTCTTGTGGG
GCTCCTGAATGCCCTGNGGTCATCATTTGGAAGGCGGTTTGGCCCCACATTTGTAGATAA
CAGTAATATGGTCTGCTCTATGTTACTCTCCTCTTGTGCCTCTCGCAGCATTCAATCCAG
A
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCATTTTGTGGTGTGGAGATGACTTCCTTACCTACTGGTCCAGTTGCTGTCCTTGTGGT
TCCTGTGAACGACTCTGTGTCAGGAATGCAGGTGTCCCTCAAGCACAAGGATGCTCAAAG
GCCTGGTGGTGTGTCCCCAGGATGCAGGGAAGCAGACCTTGTCTCTGGCGGGGAGGCTCC
TGGCAGTGTCAGAACCTGGTCGGGCGCAGGGCCCGGCCGACAACTAGCCAAACGCCCCCA
GCTGTCAGCGCAGAGCAGGGCCTGGCAGGGCGTGGGCGACAAGCTGGCCAAGCTCAGCCC
CAGGGTCTGCTTGACTCCCAAACCCGTTGTCTTTGAGGCTGTGATTTATCCGAATAAGGA
GAGGCAGTGGTTTTGCTGACCATCTCAGATTTCCGAGCCATATCCACTGGCTGGCTGGCT
GGCTTGATATTTGAACTGAAAACACAGAGGTATTCCTTTGAAATGGAGCACTCTTGTGGG
GCTCCTGAATGCCCTGNGGTCATCATTTGGAAGGCGGTTTGGCCCCACATTTGTAGATAA
CAGTAATATGGTCTGCTCTATGTTACTCTCCTCTTGTGCCTCTCGCAGCATTCAATCCAG
A
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
281-353, + strand, RNAmicro p=0.910402 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
281-353, + strand, RNAmicro p=0.910402 |
|
21-211, gnl|bosTau2|chr13 (11937249-11937058) |
|
21-211, gnl|Hg17|chr10 (24786806-24786987) |
|
21-211, gnl|Mm7|chr2 (20795704-20795902) |
| |
|
242-599, gnl|bosTau2|chr13 (11937056-11936699) |
|
242-599, gnl|canFam2|chr2 (11874688-11874080) |
|
242-599, gnl|dasNov1|scaffold_11841 (84342-84892) |
|
242-599, gnl|hg17|chr10 (24786878-24787487) |
|
242-599, gnl|Hg17|chr10 (24787019-24787383) |
|
242-599, gnl|loxAfr1|scaffold_326 (48218-47608) |
|
242-599, gnl|mm7|chr2 (20795796-20796385) |
|
242-599, gnl|Mm7|chr2 (20795904-20796291) |
|
242-599, gnl|monDom2|scaffold_7 (44169317-44168711) |
|
242-599, gnl|oryCun1|scaffold_107201 (7690-7168) |
|
242-599, gnl|panTro1|chr8 (25038021-25038630) |
|
242-599, gnl|rheMac2|chr9 (24647589-24648197) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
21-211, gnl|bosTau2|chr13 (11937249-11937058) |
|
21-211, gnl|Hg17|chr10 (24786806-24786987) |
|
21-211, gnl|Mm7|chr2 (20795704-20795902) |
| |
|
242-599, gnl|bosTau2|chr13 (11937056-11936699) |
|
242-599, gnl|canFam2|chr2 (11874688-11874080) |
|
242-599, gnl|dasNov1|scaffold_11841 (84342-84892) |
|
242-599, gnl|hg17|chr10 (24786878-24787487) |
|
242-599, gnl|Hg17|chr10 (24787019-24787383) |
|
242-599, gnl|loxAfr1|scaffold_326 (48218-47608) |
|
242-599, gnl|mm7|chr2 (20795796-20796385) |
|
242-599, gnl|Mm7|chr2 (20795904-20796291) |
|
242-599, gnl|monDom2|scaffold_7 (44169317-44168711) |
|
242-599, gnl|oryCun1|scaffold_107201 (7690-7168) |
|
242-599, gnl|panTro1|chr8 (25038021-25038630) |
|
242-599, gnl|rheMac2|chr9 (24647589-24648197) |
