Non-Coding RNA Search

Spl1-SPL01C010087

Sequence:


               
               AGGGGGAGGATTCAGTGAGTGGCTCCCAACGAACCTCCAATATCTACGCACGAGAGGCCC
TCATCGAGATTGACTATGGTGACCTGTGTGAGGATCTGAAGGATGCCCAGGCTGAAGAGG
AGATCAAGCAGGAGATGAACACGCTGCAGCAGAAGCTGAATGAGCAGCAGAGTGTGCTCC
AGCGTATTGCTGCCCCCAACATGAAGGCCATGGAAAAACTGGAAAGTGTCCGAGACAAGT
TCCAGGAGACCTCAGATGAGTTTGAGGCAGCCCGAAAGCGAGCCAAGAAGGCCAAGCAGG
CATTCGAACAGATAAAGAAGGAGCGCTTTGACCGCTTCAATGCTTGTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGGAGGATTCAGTGAGTGGCTCCCAACGAACCTCCAATATCTACGCACGAGAGGCCC
TCATCGAGATTGACTATGGTGACCTGTGTGAGGATCTGAAGGATGCCCAGGCTGAAGAGG
AGATCAAGCAGGAGATGAACACGCTGCAGCAGAAGCTGAATGAGCAGCAGAGTGTGCTCC
AGCGTATTGCTGCCCCCAACATGAAGGCCATGGAAAAACTGGAAAGTGTCCGAGACAAGT
TCCAGGAGACCTCAGATGAGTTTGAGGCAGCCCGAAAGCGAGCCAAGAAGGCCAAGCAGG
CATTCGAACAGATAAAGAAGGAGCGCTTTGACCGCTTCAATGCTTGTTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               92-256, + strand, RNAz p=0.981856

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               92-256, + strand, RNAz p=0.981856

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               92-256, gnl|bosTau2|chrX (548311-548147)
               

               
               92-256, gnl|canFam2|chrX (45088931-45089057)
               

               
               92-256, gnl|danRer3|chrUn (49281414-49281276)
               

               
               92-256, gnl|dasNov1|scaffold_54455 (4128-4253)
               

               
               92-256, gnl|echTel1|scaffold_166325 (2736-2610)
               

               
               92-256, gnl|fr1|chrUn (19903879-19903753)
               

               
               92-256, gnl|hg17|chrX (53293040-53293166)
               

               
               92-256, gnl|Hg17|chrX (53293205-53293041)
               

               
               92-256, gnl|loxAfr1|scaffold_8512 (938-1064)
               

               
               92-256, gnl|mm7|chrX (146817611-146817485)
               

               
               92-256, gnl|Mm7|chrX (146817445-146817608)
               

               
               92-256, gnl|monDom2|scaffold_30 (1321953-1321827)
               

               
               92-256, gnl|oryCun1|scaffold_179061 (59859-59733)
               

               
               92-256, gnl|panTro1|chrX (54541314-54541440)
               

               
               92-256, gnl|rheMac2|chrX (51708356-51708482)
               

               
               92-256, gnl|rn3|chrX (41598185-41598059)
               

               
               92-256, gnl|tetNig1|chr9 (3644250-3644124)
               

               
               92-256, gnl|xenTro1|scaffold_82 (1447784-1447658)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-256, gnl|bosTau2|chrX (548311-548147)
               

               
               92-256, gnl|canFam2|chrX (45088931-45089057)
               

               
               92-256, gnl|danRer3|chrUn (49281414-49281276)
               

               
               92-256, gnl|dasNov1|scaffold_54455 (4128-4253)
               

               
               92-256, gnl|echTel1|scaffold_166325 (2736-2610)
               

               
               92-256, gnl|fr1|chrUn (19903879-19903753)
               

               
               92-256, gnl|hg17|chrX (53293040-53293166)
               

               
               92-256, gnl|Hg17|chrX (53293205-53293041)
               

               
               92-256, gnl|loxAfr1|scaffold_8512 (938-1064)
               

               
               92-256, gnl|mm7|chrX (146817611-146817485)
               

               
               92-256, gnl|Mm7|chrX (146817445-146817608)
               

               
               92-256, gnl|monDom2|scaffold_30 (1321953-1321827)
               

               
               92-256, gnl|oryCun1|scaffold_179061 (59859-59733)
               

               
               92-256, gnl|panTro1|chrX (54541314-54541440)
               

               
               92-256, gnl|rheMac2|chrX (51708356-51708482)
               

               
               92-256, gnl|rn3|chrX (41598185-41598059)
               

               
               92-256, gnl|tetNig1|chr9 (3644250-3644124)
               

               
               92-256, gnl|xenTro1|scaffold_82 (1447784-1447658)

	92-256, gnl\|bosTau2\|chrX (548311-548147)
	92-256, gnl\|canFam2\|chrX (45088931-45089057)
	92-256, gnl\|danRer3\|chrUn (49281414-49281276)
	92-256, gnl\|dasNov1\|scaffold_54455 (4128-4253)
	92-256, gnl\|echTel1\|scaffold_166325 (2736-2610)
	92-256, gnl\|fr1\|chrUn (19903879-19903753)
	92-256, gnl\|hg17\|chrX (53293040-53293166)
	92-256, gnl\|Hg17\|chrX (53293205-53293041)
	92-256, gnl\|loxAfr1\|scaffold_8512 (938-1064)
	92-256, gnl\|mm7\|chrX (146817611-146817485)
	92-256, gnl\|Mm7\|chrX (146817445-146817608)
	92-256, gnl\|monDom2\|scaffold_30 (1321953-1321827)
	92-256, gnl\|oryCun1\|scaffold_179061 (59859-59733)
	92-256, gnl\|panTro1\|chrX (54541314-54541440)
	92-256, gnl\|rheMac2\|chrX (51708356-51708482)
	92-256, gnl\|rn3\|chrX (41598185-41598059)
	92-256, gnl\|tetNig1\|chr9 (3644250-3644124)
	92-256, gnl\|xenTro1\|scaffold_82 (1447784-1447658)