Non-Coding RNA Search

Spl1-SPL01C040060

Sequence:


               
               CATTTTTTTCAGCTCTCAGGAGCCAGGCATTATGCCAAAAACATTGCAGAGATTATCTTA
TGTAATGGTGCTTTTAATACCTTCATTTGTAGATGAGGAAATTGAAGCTTGGAGAGGTTA
AGTAATTTGCCCTTCTGATGTTCCTGGCTGGCTAATAGCCCCTCGACAGTGTGCCACACG
TGTTCATATACCAGTGCTTTTCCAGTTAATTCTCTCTCTTCCTAAACTGCCCGTATACTT
TCCTGAAGTTTATCAAGTGAGATCCTTTTCCTCTATTAAAAAGTGGGTCTCTGATTAACT
GATCCAAAATGATTAGGCAATATTTTAATCTTTGCCCTTTATTTAGTAAGTCCTTCAGAG
GCATTACTCTGAACAGAGAAGAATGGTCATTTCCTGGACTTGGGTAGGCTAATGGCACAC
AAATTGACGTGAGCCTGGGCCTATTGTGACTGTGAGCTTTAAACCACTGTTGGGTGGGAG
GGGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTTTTTCAGCTCTCAGGAGCCAGGCATTATGCCAAAAACATTGCAGAGATTATCTTA
TGTAATGGTGCTTTTAATACCTTCATTTGTAGATGAGGAAATTGAAGCTTGGAGAGGTTA
AGTAATTTGCCCTTCTGATGTTCCTGGCTGGCTAATAGCCCCTCGACAGTGTGCCACACG
TGTTCATATACCAGTGCTTTTCCAGTTAATTCTCTCTCTTCCTAAACTGCCCGTATACTT
TCCTGAAGTTTATCAAGTGAGATCCTTTTCCTCTATTAAAAAGTGGGTCTCTGATTAACT
GATCCAAAATGATTAGGCAATATTTTAATCTTTGCCCTTTATTTAGTAAGTCCTTCAGAG
GCATTACTCTGAACAGAGAAGAATGGTCATTTCCTGGACTTGGGTAGGCTAATGGCACAC
AAATTGACGTGAGCCTGGGCCTATTGTGACTGTGAGCTTTAAACCACTGTTGGGTGGGAG
GGGGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               5-122, + strand, RNAz p=0.756092

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-122, + strand, RNAz p=0.756092

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-473, gnl|bosTau2|chr5 (56178006-56178473)
               

               
               5-473, gnl|Hg17|chr12 (13647777-13647291)
               

               
               5-473, gnl|Mm7|chr6 (135782668-135782202)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-473, gnl|bosTau2|chr5 (56178006-56178473)
               

               
               5-473, gnl|Hg17|chr12 (13647777-13647291)
               

               
               5-473, gnl|Mm7|chr6 (135782668-135782202)

	5-473, gnl\|bosTau2\|chr5 (56178006-56178473)
	5-473, gnl\|Hg17\|chr12 (13647777-13647291)
	5-473, gnl\|Mm7\|chr6 (135782668-135782202)