Non-Coding RNA Search

Spl1-SPL01C050047

Sequence:


               
               CTTTTTGTTTCTATGCTCATATTGACTCTCCCTTCAGCGTATCAGCTGCAGCCGACACCC
TCCACAGTAGCTCAGTGTAACATGTTAGCCAAGGAAAAGTCTTAGCTCTTCTCCTGGGCT
GTTTCCCTTAAAGTTGCCATCATATTAACCTATCATAATGGCCCATTAGCTTCCAGCATT
AAGAAGGTCCAACAACCCAAGAACTTTGTCCTTAACTTTTAGTCGCTTATTTCTTTTTTT
GTCCCTACTTTCTTACCACCACGCTGCCTCCCAGTGCTCCCTCTTTGTCCTCATTCATCA
GTATCCATAGTTTGGGTAGGTTAGTTTTTAGAGTAGCCAATGGCCCAGCCCTCCACTTGG
GAAGCATGTAACTTTTAGGGTTTCTCATGCGAAGCCACAGGGTTGTGTGACAGATGGTGT
AACACCCATTCCAGGTCTGGGCCTGGGGAAGAGCGTCTGGGGTGCCTAATGTGTCTCCTA
AAGGCAGTAAAAGGGAGCACGAGGAGAGAAAGGGCCCTGAGATAGCAGGCGGAGATCTGG
CTGCCCCTCATGCCGCCCCCAGGCTGGGCCAGGCTGCCGGCCATTGACCGACGCATGACT
GGTATCTGTCTTCTCAGCCCCAGACAGCTCCAAGAGCGAAAGCCCTCCCTACTCAGCTGT
GGTGAGAGTCCCCAAAGCAGCCGAGGTGGAATGGATTTTGGATCTGAACGAGGAGGAAAA
TGAGCTGGTGCGGAGCGAATTTTACTATGAGCAGGTAACAGCAGTAACATTTGATGGGCA
TTCGAGTTTCTTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTTGTTTCTATGCTCATATTGACTCTCCCTTCAGCGTATCAGCTGCAGCCGACACCC
TCCACAGTAGCTCAGTGTAACATGTTAGCCAAGGAAAAGTCTTAGCTCTTCTCCTGGGCT
GTTTCCCTTAAAGTTGCCATCATATTAACCTATCATAATGGCCCATTAGCTTCCAGCATT
AAGAAGGTCCAACAACCCAAGAACTTTGTCCTTAACTTTTAGTCGCTTATTTCTTTTTTT
GTCCCTACTTTCTTACCACCACGCTGCCTCCCAGTGCTCCCTCTTTGTCCTCATTCATCA
GTATCCATAGTTTGGGTAGGTTAGTTTTTAGAGTAGCCAATGGCCCAGCCCTCCACTTGG
GAAGCATGTAACTTTTAGGGTTTCTCATGCGAAGCCACAGGGTTGTGTGACAGATGGTGT
AACACCCATTCCAGGTCTGGGCCTGGGGAAGAGCGTCTGGGGTGCCTAATGTGTCTCCTA
AAGGCAGTAAAAGGGAGCACGAGGAGAGAAAGGGCCCTGAGATAGCAGGCGGAGATCTGG
CTGCCCCTCATGCCGCCCCCAGGCTGGGCCAGGCTGCCGGCCATTGACCGACGCATGACT
GGTATCTGTCTTCTCAGCCCCAGACAGCTCCAAGAGCGAAAGCCCTCCCTACTCAGCTGT
GGTGAGAGTCCCCAAAGCAGCCGAGGTGGAATGGATTTTGGATCTGAACGAGGAGGAAAA
TGAGCTGGTGCGGAGCGAATTTTACTATGAGCAGGTAACAGCAGTAACATTTGATGGGCA
TTCGAGTTTCTTTAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               339-571, - strand, RNAz p=0.977427

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               339-571, - strand, RNAz p=0.977427

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-794, gnl|bosTau2|chr10 (53730653-53729854)
               

               
               1-794, gnl|Hg17|chr14 (67304960-67304134)
               

               
               1-794, gnl|Mm7|chr12 (77213001-77211999)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-794, gnl|bosTau2|chr10 (53730653-53729854)
               

               
               1-794, gnl|Hg17|chr14 (67304960-67304134)
               

               
               1-794, gnl|Mm7|chr12 (77213001-77211999)

	1-794, gnl\|bosTau2\|chr10 (53730653-53729854)
	1-794, gnl\|Hg17\|chr14 (67304960-67304134)
	1-794, gnl\|Mm7\|chr12 (77213001-77211999)