Non-Coding RNA Search

Spl1-SPL01C050070

Sequence:


               
               AAATGAGGGACGCCAGCTTGGCGGTGGTAACACAACCTGCCATTTCTCCCACCGCATCCT
CTCTGATACCCGGTCTGCTCGGTTCTCTCACTTGTGTCCCTGCTTCCAACCTATAGGCAC
TGAGCTGCCCCATCCACGTGTGTCAGAGGCTCCCTGTCCAGAGTTCCCAGGAGCCTCGGA
GTCCAAAGTCCCTCGTTGCTGGTGACAACGGTTCCCTGCCTGTGCTTCCAGCGCGCGATC
CCGACGGCAAACGGCGCAGGCCTTTCCCGTTTGTTAGCGCCTCAAGTCTCTGTCCAGAGG
TGCCTCCATCCCAGCTCTTGCTGCCATCGGGGTGGGGCGCGGGGGGAGTCCAACAGATGG
AGCATTTTGCGCCCAGCACCGACCGCCTCTGGCCAACGGTTTCCCCTCTCGGTTATGTAA
CGCCGCCGGCTTCCCACGGCCAGTGCGCATGCTCGGAACTTCTGGCCACCTCAACTGAGT
CAGATGCAGATAGAAAATATCTGGTGATTAGGTTCAGTTTTAGTCATTTCCTGCCTTCTC
AGGGCAAGTCAGGTCTAGAATTTTGCTCCTGGCCCCTCAGCTTCCCACGGAGGCCGCCTC
CCTCCTCCAGGTCTGCTTAGCCATGGGGCTCCCTGACAGTTTGCCCGGCCTTCTGACACC
GCGGCCAGGCGTCGGAGCCACACCCCAGCCAAGGCCTAGGACCCTCACTGTTTCCGTGTT
TATTCCTCATCCTTTTTTTTTTTTTTAACCACCCGTGTTTCATGTAAGTATTAATCCTGG
TAATAAACTGGGGGGGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGAGGGACGCCAGCTTGGCGGTGGTAACACAACCTGCCATTTCTCCCACCGCATCCT
CTCTGATACCCGGTCTGCTCGGTTCTCTCACTTGTGTCCCTGCTTCCAACCTATAGGCAC
TGAGCTGCCCCATCCACGTGTGTCAGAGGCTCCCTGTCCAGAGTTCCCAGGAGCCTCGGA
GTCCAAAGTCCCTCGTTGCTGGTGACAACGGTTCCCTGCCTGTGCTTCCAGCGCGCGATC
CCGACGGCAAACGGCGCAGGCCTTTCCCGTTTGTTAGCGCCTCAAGTCTCTGTCCAGAGG
TGCCTCCATCCCAGCTCTTGCTGCCATCGGGGTGGGGCGCGGGGGGAGTCCAACAGATGG
AGCATTTTGCGCCCAGCACCGACCGCCTCTGGCCAACGGTTTCCCCTCTCGGTTATGTAA
CGCCGCCGGCTTCCCACGGCCAGTGCGCATGCTCGGAACTTCTGGCCACCTCAACTGAGT
CAGATGCAGATAGAAAATATCTGGTGATTAGGTTCAGTTTTAGTCATTTCCTGCCTTCTC
AGGGCAAGTCAGGTCTAGAATTTTGCTCCTGGCCCCTCAGCTTCCCACGGAGGCCGCCTC
CCTCCTCCAGGTCTGCTTAGCCATGGGGCTCCCTGACAGTTTGCCCGGCCTTCTGACACC
GCGGCCAGGCGTCGGAGCCACACCCCAGCCAAGGCCTAGGACCCTCACTGTTTCCGTGTT
TATTCCTCATCCTTTTTTTTTTTTTTAACCACCCGTGTTTCATGTAAGTATTAATCCTGG
TAATAAACTGGGGGGGGGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               131-249, + strand, RNAz p=0.562414

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               131-249, + strand, RNAz p=0.562414

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               73-638, gnl|bosTau2|chr4 (57287758-57288299)
               

               
               73-638, gnl|Hg17|chr7 (139365289-139365819)
               

               
               73-638, gnl|Mm7|chr6 (39172275-39172854)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-638, gnl|bosTau2|chr4 (57287758-57288299)
               

               
               73-638, gnl|Hg17|chr7 (139365289-139365819)
               

               
               73-638, gnl|Mm7|chr6 (39172275-39172854)

	73-638, gnl\|bosTau2\|chr4 (57287758-57288299)
	73-638, gnl\|Hg17\|chr7 (139365289-139365819)
	73-638, gnl\|Mm7\|chr6 (39172275-39172854)