Non-Coding RNA Search

Spl1-SPL01C090068

Sequence:


               
               AAGTGGGTGCAGATCTGCGACGTCTTTGACTGTGGGAAGCTGCCATTAGAGAGACCCCGT
GGGGAGCCCTGAACTCTGCCGGCCACCCTGGCGTCCTCCTCATAGCTTGTCTTTCTCGAC
TGTGGCCCTCTGGCCCCCTCTGCTGGCCACTCACAGGATTTCTTGCCAGGATGTTCAAGA
TGAAGTCCAAGGAGGAAGAGACTGCTGTCGACAAAGGGGACCTTGTAGCCCTGAGCCTCC
CTGGTGGCCCCGGCCATGGTGACACCGACGGCCCCATCAGCCTGGACGTGCCGGACGGGG
CCCCGGACCCCCAGCGGACCAAGGCCGCCATCGACCACCTGCACCAGAAGATCCTGAAGA
TCACTGAGCAGATCAAGATCGAGCAGGAGGCGCGGGACGACAACGTGGCAGAGTACCTGA
AGCTGGCCAACAACGCCGACAAGCAGCAGGTGTCCCGCATCAAGCAGGTGTTCGAGAAGA
AGAACCAGAAGTCGGCCCAGACCATCGCCCAGCTGCACAAGAAGCTGGAGCACTACCGCC
GGCGCCTGAAGGAGATCGAGCAGAACGGGCCGTCGCGGCAGCCCAAGGACGTGCTGCGGG
ACATGCAGCAGGGCCTAAAGGACGTGGGCGCCAACATGCGAGCCGGCATCAGCGGCTTTG
GGGGCGGCGTGGTGGAGGGTGTCAAGGGCAGCCTCTCGGGCCTCTCGCAGGCCACCCACA
CCGCTGTGGTGTCCAAGCCCCGGGAGTTCGCCAGCCTCATCCGCAACAAGTTTGGCAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTGGGTGCAGATCTGCGACGTCTTTGACTGTGGGAAGCTGCCATTAGAGAGACCCCGT
GGGGAGCCCTGAACTCTGCCGGCCACCCTGGCGTCCTCCTCATAGCTTGTCTTTCTCGAC
TGTGGCCCTCTGGCCCCCTCTGCTGGCCACTCACAGGATTTCTTGCCAGGATGTTCAAGA
TGAAGTCCAAGGAGGAAGAGACTGCTGTCGACAAAGGGGACCTTGTAGCCCTGAGCCTCC
CTGGTGGCCCCGGCCATGGTGACACCGACGGCCCCATCAGCCTGGACGTGCCGGACGGGG
CCCCGGACCCCCAGCGGACCAAGGCCGCCATCGACCACCTGCACCAGAAGATCCTGAAGA
TCACTGAGCAGATCAAGATCGAGCAGGAGGCGCGGGACGACAACGTGGCAGAGTACCTGA
AGCTGGCCAACAACGCCGACAAGCAGCAGGTGTCCCGCATCAAGCAGGTGTTCGAGAAGA
AGAACCAGAAGTCGGCCCAGACCATCGCCCAGCTGCACAAGAAGCTGGAGCACTACCGCC
GGCGCCTGAAGGAGATCGAGCAGAACGGGCCGTCGCGGCAGCCCAAGGACGTGCTGCGGG
ACATGCAGCAGGGCCTAAAGGACGTGGGCGCCAACATGCGAGCCGGCATCAGCGGCTTTG
GGGGCGGCGTGGTGGAGGGTGTCAAGGGCAGCCTCTCGGGCCTCTCGCAGGCCACCCACA
CCGCTGTGGTGTCCAAGCCCCGGGAGTTCGCCAGCCTCATCCGCAACAAGTTTGGCAGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50754642|ref|XP_414456.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50754642|ref|XP_414456.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               526-645, - strand, RNAz p=0.526961

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               526-645, - strand, RNAz p=0.526961

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               207-778, gnl|bosTau2|chr16 (1130961-1131532)
               

               
               207-778, gnl|Hg17|chr1 (201969735-201970300)
               

               
               207-778, gnl|Mm7|chr1 (132262169-132261598)
               


               
               303-627, gnl|bosTau2|chr14 (43278816-43279126)
               

               
               303-627, gnl|Hg17|chr2 (68766450-68766770)
               

               
               303-627, gnl|Mm7|chr6 (116069382-116069058)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               207-778, gnl|bosTau2|chr16 (1130961-1131532)
               

               
               207-778, gnl|Hg17|chr1 (201969735-201970300)
               

               
               207-778, gnl|Mm7|chr1 (132262169-132261598)
               


               
               303-627, gnl|bosTau2|chr14 (43278816-43279126)
               

               
               303-627, gnl|Hg17|chr2 (68766450-68766770)
               

               
               303-627, gnl|Mm7|chr6 (116069382-116069058)

	207-778, gnl\|bosTau2\|chr16 (1130961-1131532)
	207-778, gnl\|Hg17\|chr1 (201969735-201970300)
	207-778, gnl\|Mm7\|chr1 (132262169-132261598)

	303-627, gnl\|bosTau2\|chr14 (43278816-43279126)
	303-627, gnl\|Hg17\|chr2 (68766450-68766770)
	303-627, gnl\|Mm7\|chr6 (116069382-116069058)