Non-Coding RNA Search

Spl1-SPL01C100094

Sequence:


               
               TTTTATTCAGTATTTCTGAAACTCCTGAATTGGGGTTTTTATTTTAATTGTAGTACTGTA
TGCACATTTTATGTATAAAAACATGTAAAATTAATTCAATACCAGATGTAAATCTGTTAG
GACCAGCTGTCTCATGTTCTTCCCAGACCCAATTTAAGTTCCATAGACATTTGATAGCTG
GCCATGTGGTTAGTATACTCAGTTGAAATGTTAAAAATAAAGCCTCAATTTTTATCTTTT
CCAATTTTTAGGGATTTTTTTCTTTAAATGTTGTGTGTAGTTTTTCTATCTGATTTTACA
GTTATTAATCATGCTCTCTGAAGGCTAGAGATTATGTCTCCACTTAATTAACAGAATCCA
GGTTAGAATATTTACATTAAATATGGCAGTGAGATGTTATGCTCTAGGGAGGAACTACTC
ATATTTTGAGAGAGAAAATGTTGTAAAGGAAGGCATTTTTAGTGTCATATTTGTATCCAC
ACAATCTTTAGAATTTAGTACTAAACTGTAATCCAGGATCTTCTCAATAGGGAAGGTGTA
CACCTTTTTTCTTGAATAGACTGCAAGATAAGTAGAAATAGGAATTGTTGCTTTACAACT
GTTGCTATGCTGGTGTAAACAACCTATTGTTTCAAATGTGTCTTTATTTGAAGTCCATTC
TTGTTGGTGGGAGTGGACTATTAAATATTCTTATTAAAGAATTCCAGTAGATAGCAAATG
GGAACATCTCATTTGGAAAGTTTGTCATTTCCTCTTGTTTATTACAGTTTTAAGAATACA
CAATCAAAAAAAATTTTTTTTTGATTTTCATCCTTGCTTAAATGCCTTCTTTATGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTATTCAGTATTTCTGAAACTCCTGAATTGGGGTTTTTATTTTAATTGTAGTACTGTA
TGCACATTTTATGTATAAAAACATGTAAAATTAATTCAATACCAGATGTAAATCTGTTAG
GACCAGCTGTCTCATGTTCTTCCCAGACCCAATTTAAGTTCCATAGACATTTGATAGCTG
GCCATGTGGTTAGTATACTCAGTTGAAATGTTAAAAATAAAGCCTCAATTTTTATCTTTT
CCAATTTTTAGGGATTTTTTTCTTTAAATGTTGTGTGTAGTTTTTCTATCTGATTTTACA
GTTATTAATCATGCTCTCTGAAGGCTAGAGATTATGTCTCCACTTAATTAACAGAATCCA
GGTTAGAATATTTACATTAAATATGGCAGTGAGATGTTATGCTCTAGGGAGGAACTACTC
ATATTTTGAGAGAGAAAATGTTGTAAAGGAAGGCATTTTTAGTGTCATATTTGTATCCAC
ACAATCTTTAGAATTTAGTACTAAACTGTAATCCAGGATCTTCTCAATAGGGAAGGTGTA
CACCTTTTTTCTTGAATAGACTGCAAGATAAGTAGAAATAGGAATTGTTGCTTTACAACT
GTTGCTATGCTGGTGTAAACAACCTATTGTTTCAAATGTGTCTTTATTTGAAGTCCATTC
TTGTTGGTGGGAGTGGACTATTAAATATTCTTATTAAAGAATTCCAGTAGATAGCAAATG
GGAACATCTCATTTGGAAAGTTTGTCATTTCCTCTTGTTTATTACAGTTTTAAGAATACA
CAATCAAAAAAAATTTTTTTTTGATTTTCATCCTTGCTTAAATGCCTTCTTTATGTAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               585-742, + strand, RNAz p=0.98104

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               585-742, + strand, RNAz p=0.98104

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-310, gnl|bosTau2|chr27 (2543060-2542766)
               

               
               1-310, gnl|Hg17|chr4 (178014369-178014077)
               


               
               546-838, gnl|bosTau2|chr27 (2542021-2541739)
               

               
               546-838, gnl|Hg17|chr4 (178013842-178013552)
               

               
               546-838, gnl|Mm7|chr8 (52934051-52934334)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-310, gnl|bosTau2|chr27 (2543060-2542766)
               

               
               1-310, gnl|Hg17|chr4 (178014369-178014077)
               


               
               546-838, gnl|bosTau2|chr27 (2542021-2541739)
               

               
               546-838, gnl|Hg17|chr4 (178013842-178013552)
               

               
               546-838, gnl|Mm7|chr8 (52934051-52934334)

	1-310, gnl\|bosTau2\|chr27 (2543060-2542766)
	1-310, gnl\|Hg17\|chr4 (178014369-178014077)

	546-838, gnl\|bosTau2\|chr27 (2542021-2541739)
	546-838, gnl\|Hg17\|chr4 (178013842-178013552)
	546-838, gnl\|Mm7\|chr8 (52934051-52934334)