Non-Coding RNA Search

Spl1-SPL01C120065

Sequence:


               
               ATCCAGTCTTATTATCTGGCCTTCAAGCCCAGCAAAGACTCTGGAGCATCCCTGTGCAGA
ACATCCAGAGCAAACCTGAAATCAAAGAAAGCTGCCAGTTACCTTACAGCAAATCTGACC
ATTGAGAAAAAGGCAGTTTGATGCGTCTGGGTTAGAGATACAGTATTTGCTCTGGGGAGG
GAGCAGGAAACTAAGATGTACTGCGTGCCTAACGCATGTGAGGGCTGGTACCAGGTACTC
CCTGGTGCGGTATCTCATGAAGGTGGTGGTGGGTGTGTTCCCATTTTCGAGATGAGGAAA
CATGTCCTGGGTGGATGAAAGCTGTGTGCCTTTCCCTGGACTGCGTTGTGGAATGACAGT
TGGTTTCTTCTAAACGAAGGCCTCAGTCCTGTCCTACCCAGCTCTTACACGTCCCCCAGA
AAATCACCGCCCTCTTCTCCTTCACTGAATGTCGGGAGACAGCAGAGTTGAACAGTTCAT
CACCCCCTGGACTAGGAGCTGGGACTGGGGTTCTAATTCTGGCTGTGACTCATGAACGGA
TCGTAGCACCTTTCTCTCTCTTATTTGAAGAAAAAGTGATGATATACGCAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCAGTCTTATTATCTGGCCTTCAAGCCCAGCAAAGACTCTGGAGCATCCCTGTGCAGA
ACATCCAGAGCAAACCTGAAATCAAAGAAAGCTGCCAGTTACCTTACAGCAAATCTGACC
ATTGAGAAAAAGGCAGTTTGATGCGTCTGGGTTAGAGATACAGTATTTGCTCTGGGGAGG
GAGCAGGAAACTAAGATGTACTGCGTGCCTAACGCATGTGAGGGCTGGTACCAGGTACTC
CCTGGTGCGGTATCTCATGAAGGTGGTGGTGGGTGTGTTCCCATTTTCGAGATGAGGAAA
CATGTCCTGGGTGGATGAAAGCTGTGTGCCTTTCCCTGGACTGCGTTGTGGAATGACAGT
TGGTTTCTTCTAAACGAAGGCCTCAGTCCTGTCCTACCCAGCTCTTACACGTCCCCCAGA
AAATCACCGCCCTCTTCTCCTTCACTGAATGTCGGGAGACAGCAGAGTTGAACAGTTCAT
CACCCCCTGGACTAGGAGCTGGGACTGGGGTTCTAATTCTGGCTGTGACTCATGAACGGA
TCGTAGCACCTTTCTCTCTCTTATTTGAAGAAAAAGTGATGATATACGCAATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               158-276, + strand, RNAz p=0.708823

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-276, + strand, RNAz p=0.708823

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-575, gnl|bosTau2|chr28 (25213918-25213344)
               

               
               1-575, gnl|Hg17|chr10 (77078337-77080403)
               

               
               1-575, gnl|Mm7|chr14 (19859459-19862844)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-575, gnl|bosTau2|chr28 (25213918-25213344)
               

               
               1-575, gnl|Hg17|chr10 (77078337-77080403)
               

               
               1-575, gnl|Mm7|chr14 (19859459-19862844)

	1-575, gnl\|bosTau2\|chr28 (25213918-25213344)
	1-575, gnl\|Hg17\|chr10 (77078337-77080403)
	1-575, gnl\|Mm7\|chr14 (19859459-19862844)