Non-Coding RNA Search

Spl1-SPL01D030044

Sequence:


               
               CAGTCCGTCCCGGCGTCCCGCCCCTCAACTCCGCGCTCCCCGCGGTTCCTTCCCGTTACC
GTCCTCTACCGCCAGTCCCCCAAGCCTCTGGGCCAAAGCCCACCTTGTCCACTGAGCAGC
GACCCCCTGGTGCAgcatgcagaagttccggggccagggatgaaaccgcacctcagcagt
gaccatgccaaatccttaactgctaggccaccagggaagtccTGAAATCTTTAATAGGGT
TTTGAACAAAGAGATCCACATTTTTATTTTACAGTGGGTTCTGCAAATTATGCAGCAGCT
CCTGGGCCACAAGCATTTCTACACATAGACTCCAGGTGTTCCCTTCAACATTTGGGCCTT
CCTGAGCCCAGGGACATCCCTTCCTCTCCAGGCAAAGCACTGGGAGCAGTGGAGCCCCCA
AGCCCGGCCAGACCATGGGCGAGCCTGGAGAACAACTGCCTGAGGAGGTGCTAGTGCTCA
TCTTCCGCCATCTGCCCCTGCGAGACAGAGCAGCGGCTGCCAGGGTCTGTAGAGCCTGGG
CTGCTGCTGCCACGTGCAGCGCTGTGTGGCACAACACGAACATCAGTTGCGACTGTGAAC
TAAAAAGCATGCTGCCACCATATCTGTACGCCTGCCTGGACCACGTTCACAATCTACGGC
TGGAATTTGAGCCGTCGAGGGAGCCAAGCCGCCGGGTGGCTACGGAGTTGCTGACCGCAC
TGGCGGGCCATACGCCCGGGCTGCGAGGCCTTTGTCTGGAGTGCCGCGGAGAAAAGCCGC
TCTTTGACTCGGGCCGCGACGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTCCGTCCCGGCGTCCCGCCCCTCAACTCCGCGCTCCCCGCGGTTCCTTCCCGTTACC
GTCCTCTACCGCCAGTCCCCCAAGCCTCTGGGCCAAAGCCCACCTTGTCCACTGAGCAGC
GACCCCCTGGTGCAgcatgcagaagttccggggccagggatgaaaccgcacctcagcagt
gaccatgccaaatccttaactgctaggccaccagggaagtccTGAAATCTTTAATAGGGT
TTTGAACAAAGAGATCCACATTTTTATTTTACAGTGGGTTCTGCAAATTATGCAGCAGCT
CCTGGGCCACAAGCATTTCTACACATAGACTCCAGGTGTTCCCTTCAACATTTGGGCCTT
CCTGAGCCCAGGGACATCCCTTCCTCTCCAGGCAAAGCACTGGGAGCAGTGGAGCCCCCA
AGCCCGGCCAGACCATGGGCGAGCCTGGAGAACAACTGCCTGAGGAGGTGCTAGTGCTCA
TCTTCCGCCATCTGCCCCTGCGAGACAGAGCAGCGGCTGCCAGGGTCTGTAGAGCCTGGG
CTGCTGCTGCCACGTGCAGCGCTGTGTGGCACAACACGAACATCAGTTGCGACTGTGAAC
TAAAAAGCATGCTGCCACCATATCTGTACGCCTGCCTGGACCACGTTCACAATCTACGGC
TGGAATTTGAGCCGTCGAGGGAGCCAAGCCGCCGGGTGGCTACGGAGTTGCTGACCGCAC
TGGCGGGCCATACGCCCGGGCTGCGAGGCCTTTGTCTGGAGTGCCGCGGAGAAAAGCCGC
TCTTTGACTCGGGCCGCGACGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55644023|ref|XP_511023.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55644023|ref|XP_511023.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               257-409, - strand, RNAz p=0.926953

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               257-409, - strand, RNAz p=0.926953

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               218-409, gnl|bosTau2|chr18 (28347510-28347699)
               


               
               585-803, gnl|bosTau2|chr18 (28348422-28348640)
               

               
               585-803, gnl|Hg17|chr16 (65754250-65754468)
               

               
               585-803, gnl|Mm7|chr8 (103866647-103866865)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               218-409, gnl|bosTau2|chr18 (28347510-28347699)
               


               
               585-803, gnl|bosTau2|chr18 (28348422-28348640)
               

               
               585-803, gnl|Hg17|chr16 (65754250-65754468)
               

               
               585-803, gnl|Mm7|chr8 (103866647-103866865)

	218-409, gnl\|bosTau2\|chr18 (28347510-28347699)

	585-803, gnl\|bosTau2\|chr18 (28348422-28348640)
	585-803, gnl\|Hg17\|chr16 (65754250-65754468)
	585-803, gnl\|Mm7\|chr8 (103866647-103866865)