Non-Coding RNA Search

Spl1-SPL01D050078

Sequence:


               
               ATAGTACTCTGCTAAATAATCTGACTACATCACACCTATGAAATGGGCACTGTTATCATT
CCCATTTTTCATAGGGAAACCTAAGTCTCAGCAAGGTTTAAGAATTGCCCCACATCTCAC
AGCCCTAAGTGGTAGAAGCAGGGATTTGAGCCTGGGTCTCCATGAGCCAGAGACCACAGC
CTGACCTCTGCGCTACACTGTGCTGCCTCTGCATTCTGCCAGAGGTCCTAAAATCCAGAC
TTGGGGCTACCCACCGCCCCCCTGCTGTGAGGAACTCAGGAAGTGATGCAGTTGGAAGTG
CTTTATGATGGTGAGGGGCAACCCAGGATGGGCAGCTCAGTCTGGTCCTCTGCTGCTTGG
ACAAGACCTGCTACTGTGCAGAGCAAGGCACTTCCGGTCCCACGACAGTCCCTGCTGTGC
TGAGCCACTGCTGCTGATGGGAGCTGATTACATCCATCCCTCAGGTGTGCTGGGGAGTAA
GCTTAGCACCCACCTTCTGAACACACCCCTACCCTGGTTCTCCCCACCTAAGACCAAGCC
TACAGCAGGCAGAGGATTTCGAACGCAGCTCACATGGGGCACCCGGTGATGACAACAGCA
ATGTAAATGCAACCCCTGCTTGCCCTCTTTCCTCCTTTGAGGGACCTACTTCACATCAAA
CAACTGGAGGAGTAAAAGGACCAAGGGAGGATTTATTACTAGCAATTTAAGTTGATCAAG
ACCCCCATGGTGATTCTGGGCAAGAACTCGCACATCTCCAAGCCTCCATTTCCCCGTCAG
ATGGTCATGAGGCTTAATTGAGATCAACCTTCAAAGTGTGGTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGTACTCTGCTAAATAATCTGACTACATCACACCTATGAAATGGGCACTGTTATCATT
CCCATTTTTCATAGGGAAACCTAAGTCTCAGCAAGGTTTAAGAATTGCCCCACATCTCAC
AGCCCTAAGTGGTAGAAGCAGGGATTTGAGCCTGGGTCTCCATGAGCCAGAGACCACAGC
CTGACCTCTGCGCTACACTGTGCTGCCTCTGCATTCTGCCAGAGGTCCTAAAATCCAGAC
TTGGGGCTACCCACCGCCCCCCTGCTGTGAGGAACTCAGGAAGTGATGCAGTTGGAAGTG
CTTTATGATGGTGAGGGGCAACCCAGGATGGGCAGCTCAGTCTGGTCCTCTGCTGCTTGG
ACAAGACCTGCTACTGTGCAGAGCAAGGCACTTCCGGTCCCACGACAGTCCCTGCTGTGC
TGAGCCACTGCTGCTGATGGGAGCTGATTACATCCATCCCTCAGGTGTGCTGGGGAGTAA
GCTTAGCACCCACCTTCTGAACACACCCCTACCCTGGTTCTCCCCACCTAAGACCAAGCC
TACAGCAGGCAGAGGATTTCGAACGCAGCTCACATGGGGCACCCGGTGATGACAACAGCA
ATGTAAATGCAACCCCTGCTTGCCCTCTTTCCTCCTTTGAGGGACCTACTTCACATCAAA
CAACTGGAGGAGTAAAAGGACCAAGGGAGGATTTATTACTAGCAATTTAAGTTGATCAAG
ACCCCCATGGTGATTCTGGGCAAGAACTCGCACATCTCCAAGCCTCCATTTCCCCGTCAG
ATGGTCATGAGGCTTAATTGAGATCAACCTTCAAAGTGTGGTACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               442-547, + strand, RNAz p=0.999322

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               442-547, + strand, RNAz p=0.999322

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               39-825, gnl|bosTau2|chr5 (19369489-19370278)
               

               
               39-825, gnl|Hg17|chr12 (50588784-50589860)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-825, gnl|bosTau2|chr5 (19369489-19370278)
               

               
               39-825, gnl|Hg17|chr12 (50588784-50589860)

	39-825, gnl\|bosTau2\|chr5 (19369489-19370278)
	39-825, gnl\|Hg17\|chr12 (50588784-50589860)