Non-Coding RNA Search

Spl1-SPL01D060043

Sequence:


               
               CTTGTCAAACCGGTTTGCTTCCCCAAGGGACTAGGTATAGGATATGTATTAATTATTTTT
AAATCTGTCCCTGGCTAGTTTCCTGAGGAACAAGCAGCAGGAAATACAAGCCAGATGTGG
ATCTCTGAGTATCTGAACCAGATAGCATGAGATTCTGTTGACCTATTTAAATTTATTTAA
ATAAAGCACTGACGTGACAGAAATGTGGCTGCAAATTTTGGTACGTATGTCTGCAAACAT
TTTATCGAAAAAGAAGTAAAAATTCAGTATCTGGAGGCAACTAGCGTAAGGCAAATTCTG
TTCAGCCTACTACATAAAATGCCAGCACTGTTTTTAACAAAGTTGAAATGTAAGTGAATG
CACATAAGCCAGTGAGGAAGAAATTTCAATGTCAGTGTTATCACTTTAAGTTCTGTTTTC
TGGGCTATAAGCAGGTATGCAACCTGCCTGACACTAGTTTGAAAATATTCAGTGTGGTTT
TTGCAGAAACCAAAGTGGCATCACTTGTTTGGAGGGGTTTTACAGTCACACCGGAATTCC
CTCCACAGAGAACAAAGCAGAGGACACAAGANAATACCTGCAAATGTATACTATATGTCA
TTTTTGAGCCAGCTTGACTTCTCTATATGTAATCATTGAGCAGGACTCTGAAAACATCCC
AATTTCAGAGAAGAAAAATAGTCTGGCTTGTGTAATATACCAAATTGTATTCAGTGATAC
AAAGAAACTCAAAACTAAATTCTGACTCTAGACAGCGTGATAAAAATGAGCTGGTAGACT
A

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGTCAAACCGGTTTGCTTCCCCAAGGGACTAGGTATAGGATATGTATTAATTATTTTT
AAATCTGTCCCTGGCTAGTTTCCTGAGGAACAAGCAGCAGGAAATACAAGCCAGATGTGG
ATCTCTGAGTATCTGAACCAGATAGCATGAGATTCTGTTGACCTATTTAAATTTATTTAA
ATAAAGCACTGACGTGACAGAAATGTGGCTGCAAATTTTGGTACGTATGTCTGCAAACAT
TTTATCGAAAAAGAAGTAAAAATTCAGTATCTGGAGGCAACTAGCGTAAGGCAAATTCTG
TTCAGCCTACTACATAAAATGCCAGCACTGTTTTTAACAAAGTTGAAATGTAAGTGAATG
CACATAAGCCAGTGAGGAAGAAATTTCAATGTCAGTGTTATCACTTTAAGTTCTGTTTTC
TGGGCTATAAGCAGGTATGCAACCTGCCTGACACTAGTTTGAAAATATTCAGTGTGGTTT
TTGCAGAAACCAAAGTGGCATCACTTGTTTGGAGGGGTTTTACAGTCACACCGGAATTCC
CTCCACAGAGAACAAAGCAGAGGACACAAGANAATACCTGCAAATGTATACTATATGTCA
TTTTTGAGCCAGCTTGACTTCTCTATATGTAATCATTGAGCAGGACTCTGAAAACATCCC
AATTTCAGAGAAGAAAAATAGTCTGGCTTGTGTAATATACCAAATTGTATTCAGTGATAC
AAAGAAACTCAAAACTAAATTCTGACTCTAGACAGCGTGATAAAAATGAGCTGGTAGACT
A

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               36-155, + strand, RNAz p=0.795689

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-155, + strand, RNAz p=0.795689

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-773, gnl|bosTau2|chr9 (39701921-39701165)
               

               
               1-773, gnl|canFam2|chr1 (72501378-72502158)
               

               
               1-773, gnl|dasNov1|scaffold_7318 (37178-36411)
               

               
               1-773, gnl|echTel1|scaffold_204709 (2756-3600)
               

               
               1-773, gnl|hg17|chr6 (131613383-131614170)
               

               
               1-773, gnl|Hg17|chr6 (131614459-131613709)
               

               
               1-773, gnl|loxAfr1|scaffold_2170 (57445-58246)
               

               
               1-773, gnl|mm7|chr10 (24951994-24951271)
               

               
               1-773, gnl|Mm7|chr10 (24950974-24951748)
               

               
               1-773, gnl|monDom2|scaffold_0 (80769687-80768860)
               

               
               1-773, gnl|oryCun1|scaffold_129032 (8500-7760)
               

               
               1-773, gnl|panTro1|chr5 (134276894-134277686)
               

               
               1-773, gnl|rheMac2|chr4 (132635092-132634296)
               

               
               1-773, gnl|rn3|chr1 (20676754-20677495)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-773, gnl|bosTau2|chr9 (39701921-39701165)
               

               
               1-773, gnl|canFam2|chr1 (72501378-72502158)
               

               
               1-773, gnl|dasNov1|scaffold_7318 (37178-36411)
               

               
               1-773, gnl|echTel1|scaffold_204709 (2756-3600)
               

               
               1-773, gnl|hg17|chr6 (131613383-131614170)
               

               
               1-773, gnl|Hg17|chr6 (131614459-131613709)
               

               
               1-773, gnl|loxAfr1|scaffold_2170 (57445-58246)
               

               
               1-773, gnl|mm7|chr10 (24951994-24951271)
               

               
               1-773, gnl|Mm7|chr10 (24950974-24951748)
               

               
               1-773, gnl|monDom2|scaffold_0 (80769687-80768860)
               

               
               1-773, gnl|oryCun1|scaffold_129032 (8500-7760)
               

               
               1-773, gnl|panTro1|chr5 (134276894-134277686)
               

               
               1-773, gnl|rheMac2|chr4 (132635092-132634296)
               

               
               1-773, gnl|rn3|chr1 (20676754-20677495)

	1-773, gnl\|bosTau2\|chr9 (39701921-39701165)
	1-773, gnl\|canFam2\|chr1 (72501378-72502158)
	1-773, gnl\|dasNov1\|scaffold_7318 (37178-36411)
	1-773, gnl\|echTel1\|scaffold_204709 (2756-3600)
	1-773, gnl\|hg17\|chr6 (131613383-131614170)
	1-773, gnl\|Hg17\|chr6 (131614459-131613709)
	1-773, gnl\|loxAfr1\|scaffold_2170 (57445-58246)
	1-773, gnl\|mm7\|chr10 (24951994-24951271)
	1-773, gnl\|Mm7\|chr10 (24950974-24951748)
	1-773, gnl\|monDom2\|scaffold_0 (80769687-80768860)
	1-773, gnl\|oryCun1\|scaffold_129032 (8500-7760)
	1-773, gnl\|panTro1\|chr5 (134276894-134277686)
	1-773, gnl\|rheMac2\|chr4 (132635092-132634296)
	1-773, gnl\|rn3\|chr1 (20676754-20677495)